Experiment: undecene 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrB and ybhK are separated by 191 nucleotides ybhK and moaA are separated by 396 nucleotides
b0779: uvrB - excinuclease ABC subunit B (NCBI), at 812,749 to 814,770
uvrB
b0780: ybhK - predicted transferase with NAD(P)-binding Rossmann-fold domain (NCBI), at 814,962 to 815,870
ybhK
b0781: moaA - molybdenum cofactor biosynthesis protein A (NCBI), at 816,267 to 817,256
moaA
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 813.970 kb on + strand, within uvrB at 813.970 kb on + strand, within uvrB at 814.041 kb on + strand, within uvrB at 814.100 kb on + strand, within uvrB at 814.158 kb on - strand, within uvrB at 814.187 kb on - strand, within uvrB at 814.207 kb on + strand, within uvrB at 814.210 kb on - strand, within uvrB at 814.210 kb on - strand, within uvrB at 814.281 kb on - strand, within uvrB at 814.283 kb on + strand, within uvrB at 814.492 kb on + strand, within uvrB at 814.675 kb on + strand at 814.818 kb on - strand at 814.818 kb on - strand at 814.842 kb on - strand at 814.972 kb on - strand at 815.024 kb on + strand at 815.024 kb on + strand at 815.048 kb on - strand at 815.311 kb on + strand, within ybhK at 815.311 kb on + strand, within ybhK at 815.311 kb on - strand, within ybhK at 815.311 kb on - strand, within ybhK at 815.358 kb on - strand, within ybhK at 815.413 kb on - strand, within ybhK at 815.552 kb on + strand, within ybhK at 815.554 kb on - strand, within ybhK at 815.557 kb on + strand, within ybhK at 815.675 kb on - strand, within ybhK at 815.675 kb on - strand, within ybhK at 815.688 kb on + strand, within ybhK at 815.905 kb on - strand at 816.260 kb on + strand at 816.333 kb on - strand at 816.363 kb on + strand at 816.363 kb on + strand at 816.378 kb on - strand, within moaA at 816.609 kb on - strand, within moaA at 816.624 kb on + strand, within moaA at 816.680 kb on + strand, within moaA at 816.746 kb on + strand, within moaA at 816.746 kb on + strand, within moaA at 816.782 kb on - strand, within moaA at 816.817 kb on + strand, within moaA
Per-strain Table
Position Strand Gene LocusTag Fraction undecene 5 vol% remove 813,970 + uvrB b0779 0.60 -0.1 813,970 + uvrB b0779 0.60 -0.1 814,041 + uvrB b0779 0.64 +0.1 814,100 + uvrB b0779 0.67 +0.6 814,158 - uvrB b0779 0.70 +0.4 814,187 - uvrB b0779 0.71 +0.6 814,207 + uvrB b0779 0.72 -0.1 814,210 - uvrB b0779 0.72 +0.5 814,210 - uvrB b0779 0.72 +0.1 814,281 - uvrB b0779 0.76 -0.0 814,283 + uvrB b0779 0.76 -0.2 814,492 + uvrB b0779 0.86 +1.3 814,675 + +0.1 814,818 - +1.6 814,818 - -0.2 814,842 - +0.7 814,972 - +0.4 815,024 + -1.0 815,024 + -0.6 815,048 - -0.6 815,311 + ybhK b0780 0.38 -0.6 815,311 + ybhK b0780 0.38 -0.7 815,311 - ybhK b0780 0.38 -0.5 815,311 - ybhK b0780 0.38 -1.0 815,358 - ybhK b0780 0.44 +2.1 815,413 - ybhK b0780 0.50 -2.0 815,552 + ybhK b0780 0.65 -0.2 815,554 - ybhK b0780 0.65 -0.7 815,557 + ybhK b0780 0.65 -3.2 815,675 - ybhK b0780 0.78 -0.8 815,675 - ybhK b0780 0.78 -1.1 815,688 + ybhK b0780 0.80 -1.2 815,905 - +1.1 816,260 + +0.5 816,333 - -0.1 816,363 + -2.2 816,363 + +0.5 816,378 - moaA b0781 0.11 +1.0 816,609 - moaA b0781 0.35 +0.7 816,624 + moaA b0781 0.36 -0.2 816,680 + moaA b0781 0.42 -0.2 816,746 + moaA b0781 0.48 +0.5 816,746 + moaA b0781 0.48 +0.0 816,782 - moaA b0781 0.52 -0.3 816,817 + moaA b0781 0.56 -0.5
Or see this region's nucleotide sequence