Experiment: undecene 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybcM and ylcH are separated by 116 nucleotides ylcH and ybcN overlap by 4 nucleotides ybcN and ninE overlap by 1 nucleotides ninE and ybcO overlap by 8 nucleotides ybcO and rusA overlap by 4 nucleotides rusA and ylcG overlap by 4 nucleotides
b0546: ybcM - DLP12 prophage; predicted DNA-binding transcriptional regulator (NCBI), at 570,677 to 571,474
ybcM
b4588: ylcH - hypothetical protein, DLP12 prophage (RefSeq), at 571,591 to 571,692
ylcH
b0547: ybcN - DLP12 prophage; predicted protein (NCBI), at 571,689 to 572,144
ybcN
b0548: ninE - DLP12 prophage; conserved protein (NCBI), at 572,144 to 572,314
ninE
b0549: ybcO - DLP12 prophage; predicted protein (NCBI), at 572,307 to 572,597
ybcO
b0550: rusA - DLP12 prophage; endonuclease RUS (NCBI), at 572,594 to 572,956
rusA
b4509: ylcG - DLP12 prophage; predicted protein (NCBI), at 572,953 to 573,093
ylcG
Position (kb) 571
572
573 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 570.697 kb on - strand at 570.772 kb on + strand, within ybcM at 570.772 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.817 kb on + strand, within ybcM at 570.896 kb on + strand, within ybcM at 570.992 kb on + strand, within ybcM at 570.992 kb on + strand, within ybcM at 571.055 kb on + strand, within ybcM at 571.084 kb on - strand, within ybcM at 571.094 kb on - strand, within ybcM at 571.105 kb on + strand, within ybcM at 571.115 kb on + strand, within ybcM at 571.124 kb on - strand, within ybcM at 571.130 kb on - strand, within ybcM at 571.170 kb on - strand, within ybcM at 571.186 kb on + strand, within ybcM at 571.207 kb on + strand, within ybcM at 571.207 kb on + strand, within ybcM at 571.215 kb on - strand, within ybcM at 571.226 kb on + strand, within ybcM at 571.283 kb on + strand, within ybcM at 571.301 kb on + strand, within ybcM at 571.301 kb on + strand, within ybcM at 571.306 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.341 kb on - strand, within ybcM at 571.345 kb on - strand, within ybcM at 571.418 kb on + strand at 571.427 kb on + strand at 571.477 kb on - strand at 571.486 kb on - strand at 571.546 kb on - strand at 571.560 kb on - strand at 571.575 kb on - strand at 571.575 kb on - strand at 571.585 kb on - strand at 571.596 kb on + strand at 571.596 kb on - strand at 571.596 kb on - strand at 571.602 kb on - strand, within ylcH at 571.618 kb on + strand, within ylcH at 571.623 kb on - strand, within ylcH at 571.629 kb on + strand, within ylcH at 571.638 kb on - strand, within ylcH at 571.671 kb on + strand, within ylcH at 571.681 kb on + strand, within ylcH at 571.681 kb on + strand, within ylcH at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.687 kb on + strand at 571.694 kb on - strand at 571.695 kb on - strand at 571.752 kb on + strand, within ybcN at 571.752 kb on + strand, within ybcN at 571.909 kb on + strand, within ybcN at 571.931 kb on + strand, within ybcN at 571.937 kb on - strand, within ybcN at 571.939 kb on - strand, within ybcN at 571.939 kb on - strand, within ybcN at 572.055 kb on + strand, within ybcN at 572.068 kb on - strand, within ybcN at 572.179 kb on + strand, within ninE at 572.179 kb on + strand, within ninE at 572.179 kb on + strand, within ninE at 572.195 kb on - strand, within ninE at 572.214 kb on - strand, within ninE at 572.343 kb on - strand, within ybcO at 572.557 kb on - strand, within ybcO at 572.617 kb on + strand at 572.625 kb on - strand at 572.679 kb on - strand, within rusA at 572.679 kb on - strand, within rusA at 572.697 kb on - strand, within rusA at 572.697 kb on - strand, within rusA at 572.780 kb on + strand, within rusA at 572.899 kb on - strand, within rusA at 572.981 kb on - strand, within ylcG at 573.031 kb on + strand, within ylcG at 573.031 kb on + strand, within ylcG at 573.078 kb on - strand, within ylcG at 573.080 kb on + strand at 573.088 kb on - strand at 573.094 kb on + strand at 573.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction undecene 5 vol% remove 570,697 - -0.1 570,772 + ybcM b0546 0.12 +0.7 570,772 + ybcM b0546 0.12 +0.3 570,804 + ybcM b0546 0.16 +0.6 570,804 + ybcM b0546 0.16 -0.2 570,804 + ybcM b0546 0.16 +0.2 570,804 + ybcM b0546 0.16 -0.2 570,804 + ybcM b0546 0.16 +0.3 570,817 + ybcM b0546 0.18 +0.1 570,896 + ybcM b0546 0.27 -0.7 570,992 + ybcM b0546 0.39 -0.2 570,992 + ybcM b0546 0.39 +0.2 571,055 + ybcM b0546 0.47 -0.3 571,084 - ybcM b0546 0.51 -0.4 571,094 - ybcM b0546 0.52 -0.5 571,105 + ybcM b0546 0.54 -2.0 571,115 + ybcM b0546 0.55 +0.4 571,124 - ybcM b0546 0.56 -0.9 571,130 - ybcM b0546 0.57 -0.1 571,170 - ybcM b0546 0.62 +1.4 571,186 + ybcM b0546 0.64 +0.2 571,207 + ybcM b0546 0.66 +0.2 571,207 + ybcM b0546 0.66 -0.3 571,215 - ybcM b0546 0.67 +0.5 571,226 + ybcM b0546 0.69 +0.5 571,283 + ybcM b0546 0.76 +0.4 571,301 + ybcM b0546 0.78 -0.5 571,301 + ybcM b0546 0.78 +1.7 571,306 + ybcM b0546 0.79 -0.0 571,340 + ybcM b0546 0.83 +0.2 571,340 + ybcM b0546 0.83 +0.0 571,340 + ybcM b0546 0.83 +0.2 571,341 - ybcM b0546 0.83 +0.3 571,345 - ybcM b0546 0.84 +0.5 571,418 + +0.3 571,427 + +0.1 571,477 - +0.3 571,486 - +0.8 571,546 - +0.2 571,560 - +0.1 571,575 - +0.4 571,575 - +0.3 571,585 - +0.0 571,596 + -1.2 571,596 - +2.1 571,596 - -0.3 571,602 - ylcH b4588 0.11 +0.2 571,618 + ylcH b4588 0.26 +0.2 571,623 - ylcH b4588 0.31 -0.4 571,629 + ylcH b4588 0.37 -1.4 571,638 - ylcH b4588 0.46 -0.6 571,671 + ylcH b4588 0.78 -2.9 571,681 + ylcH b4588 0.88 -3.4 571,681 + ylcH b4588 0.88 -2.1 571,682 - -0.1 571,682 - -0.4 571,682 - -0.5 571,682 - -1.5 571,682 - -0.2 571,682 - -0.2 571,682 - +1.8 571,687 + -1.3 571,694 - -1.7 571,695 - -0.5 571,752 + ybcN b0547 0.14 -3.1 571,752 + ybcN b0547 0.14 -0.9 571,909 + ybcN b0547 0.48 -2.8 571,931 + ybcN b0547 0.53 -2.1 571,937 - ybcN b0547 0.54 -0.1 571,939 - ybcN b0547 0.55 +0.6 571,939 - ybcN b0547 0.55 -1.1 572,055 + ybcN b0547 0.80 -4.3 572,068 - ybcN b0547 0.83 +0.3 572,179 + ninE b0548 0.20 -2.4 572,179 + ninE b0548 0.20 -2.7 572,179 + ninE b0548 0.20 -2.0 572,195 - ninE b0548 0.30 -0.0 572,214 - ninE b0548 0.41 -0.5 572,343 - ybcO b0549 0.12 -1.0 572,557 - ybcO b0549 0.86 -0.1 572,617 + -4.1 572,625 - -0.2 572,679 - rusA b0550 0.23 +0.8 572,679 - rusA b0550 0.23 -0.1 572,697 - rusA b0550 0.28 -0.0 572,697 - rusA b0550 0.28 +1.1 572,780 + rusA b0550 0.51 -2.1 572,899 - rusA b0550 0.84 -0.5 572,981 - ylcG b4509 0.20 +0.2 573,031 + ylcG b4509 0.55 -2.4 573,031 + ylcG b4509 0.55 -3.4 573,078 - ylcG b4509 0.89 -2.7 573,080 + -3.7 573,088 - +0.6 573,094 + -1.5 573,141 + -3.4
Or see this region's nucleotide sequence