Experiment: undecene 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemX and hemD are separated by 21 nucleotides hemD and hemC overlap by 4 nucleotides hemC and cyaA are separated by 386 nucleotides
b3803: hemX - predicted uroporphyrinogen III methylase (NCBI), at 3,985,908 to 3,987,089
hemX
b3804: hemD - uroporphyrinogen-III synthetase (NCBI), at 3,987,111 to 3,987,851
hemD
b3805: hemC - porphobilinogen deaminase (NCBI), at 3,987,848 to 3,988,789
hemC
b3806: cyaA - adenylate cyclase (NCBI), at 3,989,176 to 3,991,722
cyaA
Position (kb)
3987
3988
3989 Strain fitness (log2 ratio)
-1
0
1
2 at 3986.897 kb on + strand, within hemX at 3986.897 kb on + strand, within hemX at 3986.922 kb on + strand, within hemX at 3986.948 kb on + strand, within hemX at 3986.964 kb on - strand, within hemX at 3986.964 kb on - strand, within hemX at 3987.023 kb on + strand at 3987.023 kb on + strand at 3987.027 kb on - strand at 3987.027 kb on - strand at 3987.031 kb on + strand at 3987.033 kb on + strand at 3987.048 kb on + strand at 3987.048 kb on - strand at 3987.051 kb on - strand at 3987.059 kb on - strand at 3987.101 kb on + strand at 3987.114 kb on + strand at 3988.789 kb on - strand at 3988.800 kb on - strand at 3988.800 kb on - strand at 3988.830 kb on - strand at 3988.830 kb on - strand at 3988.901 kb on - strand at 3988.901 kb on - strand at 3988.917 kb on + strand at 3988.917 kb on + strand at 3988.958 kb on + strand at 3988.961 kb on + strand at 3988.966 kb on + strand at 3988.983 kb on + strand at 3989.014 kb on - strand at 3989.079 kb on - strand at 3989.173 kb on + strand at 3989.173 kb on + strand at 3989.181 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction undecene 5 vol% remove 3,986,897 + hemX b3803 0.84 -0.8 3,986,897 + hemX b3803 0.84 -0.6 3,986,922 + hemX b3803 0.86 +0.7 3,986,948 + hemX b3803 0.88 -0.9 3,986,964 - hemX b3803 0.89 +0.8 3,986,964 - hemX b3803 0.89 +0.1 3,987,023 + -1.0 3,987,023 + -0.7 3,987,027 - +0.9 3,987,027 - +0.0 3,987,031 + -0.4 3,987,033 + -0.1 3,987,048 + -0.6 3,987,048 - -0.6 3,987,051 - -0.5 3,987,059 - -0.2 3,987,101 + -0.3 3,987,114 + -0.8 3,988,789 - +1.0 3,988,800 - +0.3 3,988,800 - -0.1 3,988,830 - +0.3 3,988,830 - +0.9 3,988,901 - +1.3 3,988,901 - +1.2 3,988,917 + +0.2 3,988,917 + +0.7 3,988,958 + +0.1 3,988,961 + -0.9 3,988,966 + +1.2 3,988,983 + +0.6 3,989,014 - +2.0 3,989,079 - +2.0 3,989,173 + +0.8 3,989,173 + +0.6 3,989,181 + +1.9
Or see this region's nucleotide sequence