Experiment: undecene 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjjX and ytjC are separated by 51 nucleotides ytjC and rob overlap by 4 nucleotides rob and creA are separated by 210 nucleotides creA and creB are separated by 12 nucleotides
b4394: yjjX - orf, hypothetical protein (VIMSS), at 4,631,256 to 4,631,768
yjjX
b4395: ytjC - phosphoglycerate mutase (NCBI), at 4,631,820 to 4,632,467
ytjC
b4396: rob - DNA-binding transcriptional activator (NCBI), at 4,632,464 to 4,633,333
rob
b4397: creA - hypothetical protein (NCBI), at 4,633,544 to 4,634,017
creA
b4398: creB - DNA-binding response regulator in two-component regulatory system with CreC (NCBI), at 4,634,030 to 4,634,719
creB
Position (kb)
4632
4633
4634 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4631.520 kb on + strand, within yjjX at 4631.537 kb on - strand, within yjjX at 4631.871 kb on - strand at 4631.878 kb on + strand at 4631.965 kb on + strand, within ytjC at 4631.965 kb on + strand, within ytjC at 4631.991 kb on - strand, within ytjC at 4632.026 kb on - strand, within ytjC at 4632.026 kb on - strand, within ytjC at 4632.026 kb on - strand, within ytjC at 4632.255 kb on + strand, within ytjC at 4632.357 kb on - strand, within ytjC at 4632.357 kb on - strand, within ytjC at 4632.395 kb on + strand, within ytjC at 4632.439 kb on + strand at 4632.439 kb on + strand at 4632.444 kb on + strand at 4632.444 kb on + strand at 4632.447 kb on - strand at 4632.447 kb on - strand at 4632.520 kb on + strand at 4632.520 kb on + strand at 4632.545 kb on - strand at 4632.550 kb on - strand at 4632.567 kb on - strand, within rob at 4632.569 kb on - strand, within rob at 4632.579 kb on - strand, within rob at 4632.583 kb on + strand, within rob at 4632.609 kb on - strand, within rob at 4632.650 kb on + strand, within rob at 4632.664 kb on - strand, within rob at 4632.664 kb on - strand, within rob at 4632.700 kb on + strand, within rob at 4632.708 kb on - strand, within rob at 4632.708 kb on - strand, within rob at 4632.805 kb on - strand, within rob at 4632.883 kb on + strand, within rob at 4632.883 kb on + strand, within rob at 4632.907 kb on + strand, within rob at 4632.910 kb on - strand, within rob at 4632.915 kb on - strand, within rob at 4632.915 kb on - strand, within rob at 4632.931 kb on + strand, within rob at 4632.932 kb on + strand, within rob at 4633.037 kb on + strand, within rob at 4633.037 kb on + strand, within rob at 4633.038 kb on - strand, within rob at 4633.089 kb on + strand, within rob at 4633.089 kb on + strand, within rob at 4633.102 kb on - strand, within rob at 4633.102 kb on - strand, within rob at 4633.193 kb on + strand, within rob at 4633.193 kb on + strand, within rob at 4633.193 kb on + strand, within rob at 4633.227 kb on - strand, within rob at 4633.227 kb on - strand, within rob at 4633.244 kb on - strand, within rob at 4633.274 kb on - strand at 4633.306 kb on - strand at 4633.317 kb on + strand at 4633.364 kb on - strand at 4633.367 kb on + strand at 4633.441 kb on - strand at 4633.445 kb on - strand at 4633.540 kb on - strand at 4633.602 kb on + strand, within creA at 4633.610 kb on - strand, within creA at 4633.621 kb on + strand, within creA at 4633.803 kb on + strand, within creA at 4633.871 kb on + strand, within creA at 4633.885 kb on + strand, within creA at 4633.888 kb on + strand, within creA at 4633.897 kb on - strand, within creA at 4633.942 kb on - strand, within creA at 4633.942 kb on - strand, within creA at 4634.001 kb on + strand at 4634.003 kb on + strand at 4634.232 kb on + strand, within creB at 4634.256 kb on + strand, within creB at 4634.274 kb on - strand, within creB at 4634.276 kb on + strand, within creB at 4634.318 kb on + strand, within creB
Per-strain Table
Position Strand Gene LocusTag Fraction undecene 5 vol% remove 4,631,520 + yjjX b4394 0.51 -0.8 4,631,537 - yjjX b4394 0.55 +0.4 4,631,871 - -1.0 4,631,878 + +0.2 4,631,965 + ytjC b4395 0.22 +0.4 4,631,965 + ytjC b4395 0.22 +0.7 4,631,991 - ytjC b4395 0.26 -0.0 4,632,026 - ytjC b4395 0.32 +0.3 4,632,026 - ytjC b4395 0.32 -0.4 4,632,026 - ytjC b4395 0.32 -0.3 4,632,255 + ytjC b4395 0.67 +0.3 4,632,357 - ytjC b4395 0.83 -0.1 4,632,357 - ytjC b4395 0.83 +0.7 4,632,395 + ytjC b4395 0.89 +0.3 4,632,439 + +0.4 4,632,439 + +0.2 4,632,444 + -0.3 4,632,444 + -0.4 4,632,447 - +0.5 4,632,447 - +0.5 4,632,520 + -0.9 4,632,520 + -1.4 4,632,545 - -0.8 4,632,550 - -1.4 4,632,567 - rob b4396 0.12 -0.2 4,632,569 - rob b4396 0.12 -1.2 4,632,579 - rob b4396 0.13 -0.1 4,632,583 + rob b4396 0.14 -0.8 4,632,609 - rob b4396 0.17 -1.5 4,632,650 + rob b4396 0.21 -1.0 4,632,664 - rob b4396 0.23 +0.4 4,632,664 - rob b4396 0.23 -1.0 4,632,700 + rob b4396 0.27 -1.8 4,632,708 - rob b4396 0.28 -1.9 4,632,708 - rob b4396 0.28 -2.0 4,632,805 - rob b4396 0.39 -1.1 4,632,883 + rob b4396 0.48 -1.5 4,632,883 + rob b4396 0.48 -1.1 4,632,907 + rob b4396 0.51 -1.4 4,632,910 - rob b4396 0.51 +0.1 4,632,915 - rob b4396 0.52 -1.3 4,632,915 - rob b4396 0.52 -1.5 4,632,931 + rob b4396 0.54 -0.5 4,632,932 + rob b4396 0.54 -1.2 4,633,037 + rob b4396 0.66 -2.3 4,633,037 + rob b4396 0.66 -1.1 4,633,038 - rob b4396 0.66 -2.1 4,633,089 + rob b4396 0.72 -2.1 4,633,089 + rob b4396 0.72 -1.6 4,633,102 - rob b4396 0.73 -2.4 4,633,102 - rob b4396 0.73 -2.9 4,633,193 + rob b4396 0.84 -2.9 4,633,193 + rob b4396 0.84 -1.5 4,633,193 + rob b4396 0.84 -3.2 4,633,227 - rob b4396 0.88 -2.1 4,633,227 - rob b4396 0.88 -2.2 4,633,244 - rob b4396 0.90 -2.0 4,633,274 - -2.1 4,633,306 - -2.1 4,633,317 + -1.9 4,633,364 - +1.4 4,633,367 + -2.6 4,633,441 - +2.0 4,633,445 - +3.6 4,633,540 - +1.9 4,633,602 + creA b4397 0.12 -0.6 4,633,610 - creA b4397 0.14 +2.2 4,633,621 + creA b4397 0.16 -0.1 4,633,803 + creA b4397 0.55 +0.8 4,633,871 + creA b4397 0.69 -0.2 4,633,885 + creA b4397 0.72 +2.4 4,633,888 + creA b4397 0.73 +0.2 4,633,897 - creA b4397 0.74 +0.3 4,633,942 - creA b4397 0.84 +0.7 4,633,942 - creA b4397 0.84 -1.1 4,634,001 + +0.6 4,634,003 + +0.4 4,634,232 + creB b4398 0.29 -0.2 4,634,256 + creB b4398 0.33 +0.9 4,634,274 - creB b4398 0.35 +1.1 4,634,276 + creB b4398 0.36 -0.2 4,634,318 + creB b4398 0.42 +0.6
Or see this region's nucleotide sequence