Experiment: undecene 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wbbH and glf overlap by 1 nucleotides glf and rfbX are separated by 7 nucleotides
b2035: wbbH - O-antigen polymerase (NCBI), at 2,104,084 to 2,105,250
wbbH
b2036: glf - UDP-galactopyranose mutase, FAD/NAD(P)-binding (NCBI), at 2,105,250 to 2,106,353
glf
b2037: rfbX - predicted polisoprenol-linked O-antigen transporter (NCBI), at 2,106,361 to 2,107,608
rfbX
Position (kb)
2105
2106
2107 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2104.300 kb on - strand, within wbbH at 2104.308 kb on - strand, within wbbH at 2104.308 kb on - strand, within wbbH at 2104.323 kb on - strand, within wbbH at 2104.396 kb on - strand, within wbbH at 2104.397 kb on - strand, within wbbH at 2104.398 kb on - strand, within wbbH at 2104.403 kb on - strand, within wbbH at 2104.411 kb on - strand, within wbbH at 2104.411 kb on - strand, within wbbH at 2104.416 kb on - strand, within wbbH at 2104.416 kb on - strand, within wbbH at 2104.451 kb on - strand, within wbbH at 2104.505 kb on - strand, within wbbH at 2104.546 kb on - strand, within wbbH at 2104.546 kb on - strand, within wbbH at 2104.556 kb on - strand, within wbbH at 2104.584 kb on - strand, within wbbH at 2104.584 kb on - strand, within wbbH at 2104.584 kb on - strand, within wbbH at 2104.584 kb on - strand, within wbbH at 2104.603 kb on - strand, within wbbH at 2104.632 kb on - strand, within wbbH at 2104.633 kb on - strand, within wbbH at 2104.633 kb on - strand, within wbbH at 2104.656 kb on - strand, within wbbH at 2104.657 kb on - strand, within wbbH at 2104.751 kb on - strand, within wbbH at 2104.815 kb on - strand, within wbbH at 2104.842 kb on - strand, within wbbH at 2104.853 kb on - strand, within wbbH at 2104.853 kb on - strand, within wbbH at 2104.859 kb on - strand, within wbbH at 2104.891 kb on - strand, within wbbH at 2104.891 kb on - strand, within wbbH at 2104.891 kb on - strand, within wbbH at 2104.891 kb on - strand, within wbbH at 2104.901 kb on - strand, within wbbH at 2104.901 kb on - strand, within wbbH at 2104.906 kb on - strand, within wbbH at 2104.923 kb on - strand, within wbbH at 2104.923 kb on - strand, within wbbH at 2104.923 kb on - strand, within wbbH at 2104.923 kb on - strand, within wbbH at 2104.923 kb on - strand, within wbbH at 2104.955 kb on - strand, within wbbH at 2104.955 kb on - strand, within wbbH at 2104.955 kb on - strand, within wbbH at 2104.955 kb on - strand, within wbbH at 2104.955 kb on - strand, within wbbH at 2104.962 kb on - strand, within wbbH at 2104.962 kb on - strand, within wbbH at 2104.962 kb on - strand, within wbbH at 2104.962 kb on - strand, within wbbH at 2104.972 kb on - strand, within wbbH at 2105.044 kb on - strand, within wbbH at 2105.044 kb on - strand, within wbbH at 2105.078 kb on - strand, within wbbH at 2105.143 kb on - strand at 2105.143 kb on - strand at 2105.235 kb on - strand at 2105.243 kb on - strand at 2105.243 kb on - strand at 2105.243 kb on - strand at 2105.248 kb on - strand at 2105.301 kb on - strand at 2105.301 kb on - strand at 2105.370 kb on - strand, within glf at 2105.370 kb on - strand, within glf at 2105.427 kb on - strand, within glf at 2105.450 kb on - strand, within glf at 2105.450 kb on - strand, within glf at 2105.460 kb on - strand, within glf at 2105.460 kb on - strand, within glf at 2105.482 kb on - strand, within glf at 2105.493 kb on - strand, within glf at 2105.624 kb on - strand, within glf at 2105.649 kb on - strand, within glf at 2105.649 kb on - strand, within glf at 2105.649 kb on - strand, within glf at 2105.652 kb on - strand, within glf at 2105.652 kb on - strand, within glf at 2105.654 kb on - strand, within glf at 2105.654 kb on - strand, within glf at 2105.673 kb on - strand, within glf at 2105.673 kb on - strand, within glf at 2105.673 kb on - strand, within glf at 2105.673 kb on - strand, within glf at 2105.673 kb on - strand, within glf at 2105.673 kb on - strand, within glf at 2105.673 kb on - strand, within glf at 2105.673 kb on - strand, within glf at 2105.682 kb on - strand, within glf at 2105.770 kb on - strand, within glf at 2105.773 kb on - strand, within glf at 2105.773 kb on - strand, within glf at 2105.773 kb on - strand, within glf at 2105.773 kb on - strand, within glf at 2105.799 kb on - strand, within glf at 2105.799 kb on - strand, within glf at 2105.799 kb on - strand, within glf at 2105.881 kb on - strand, within glf at 2105.892 kb on - strand, within glf at 2105.892 kb on - strand, within glf at 2105.907 kb on - strand, within glf at 2105.928 kb on - strand, within glf at 2105.930 kb on - strand, within glf at 2105.946 kb on - strand, within glf at 2105.990 kb on - strand, within glf at 2106.040 kb on - strand, within glf at 2106.124 kb on - strand, within glf at 2106.217 kb on - strand, within glf at 2106.218 kb on - strand, within glf at 2106.222 kb on - strand, within glf at 2106.222 kb on - strand, within glf at 2106.222 kb on - strand, within glf at 2106.222 kb on - strand, within glf at 2106.223 kb on - strand, within glf at 2106.227 kb on - strand, within glf at 2106.230 kb on - strand, within glf at 2106.230 kb on - strand, within glf at 2106.230 kb on - strand, within glf at 2106.230 kb on - strand, within glf at 2106.230 kb on - strand, within glf at 2106.231 kb on - strand, within glf at 2106.231 kb on - strand, within glf at 2106.231 kb on - strand, within glf at 2106.235 kb on - strand, within glf at 2106.237 kb on - strand, within glf at 2106.328 kb on - strand at 2106.331 kb on - strand at 2106.408 kb on + strand at 2106.414 kb on - strand at 2106.416 kb on - strand at 2106.416 kb on - strand at 2106.416 kb on - strand at 2106.421 kb on - strand at 2106.421 kb on - strand at 2106.421 kb on - strand at 2106.428 kb on - strand at 2106.428 kb on - strand at 2106.428 kb on - strand at 2106.441 kb on - strand at 2106.441 kb on - strand at 2106.443 kb on - strand at 2106.449 kb on - strand at 2106.454 kb on - strand at 2106.560 kb on - strand, within rfbX at 2106.560 kb on - strand, within rfbX at 2106.560 kb on - strand, within rfbX at 2106.564 kb on - strand, within rfbX at 2106.574 kb on - strand, within rfbX at 2106.574 kb on - strand, within rfbX at 2106.574 kb on - strand, within rfbX at 2106.603 kb on - strand, within rfbX at 2106.612 kb on - strand, within rfbX at 2106.642 kb on - strand, within rfbX at 2106.642 kb on - strand, within rfbX at 2106.673 kb on - strand, within rfbX at 2106.673 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.726 kb on - strand, within rfbX at 2106.760 kb on - strand, within rfbX at 2106.764 kb on - strand, within rfbX at 2106.769 kb on - strand, within rfbX at 2106.771 kb on - strand, within rfbX at 2106.771 kb on - strand, within rfbX at 2106.784 kb on - strand, within rfbX at 2106.817 kb on - strand, within rfbX at 2106.817 kb on - strand, within rfbX at 2106.848 kb on - strand, within rfbX at 2106.862 kb on - strand, within rfbX at 2106.862 kb on - strand, within rfbX at 2106.988 kb on - strand, within rfbX at 2106.989 kb on - strand, within rfbX at 2106.989 kb on - strand, within rfbX at 2107.009 kb on - strand, within rfbX at 2107.009 kb on - strand, within rfbX at 2107.142 kb on - strand, within rfbX at 2107.155 kb on - strand, within rfbX at 2107.198 kb on - strand, within rfbX at 2107.211 kb on - strand, within rfbX at 2107.222 kb on - strand, within rfbX at 2107.249 kb on - strand, within rfbX at 2107.257 kb on - strand, within rfbX at 2107.314 kb on - strand, within rfbX at 2107.314 kb on - strand, within rfbX at 2107.319 kb on - strand, within rfbX
Per-strain Table
Position Strand Gene LocusTag Fraction undecene 5 vol% remove 2,104,300 - wbbH b2035 0.19 +0.3 2,104,308 - wbbH b2035 0.19 +0.2 2,104,308 - wbbH b2035 0.19 +0.2 2,104,323 - wbbH b2035 0.20 +0.4 2,104,396 - wbbH b2035 0.27 -0.2 2,104,397 - wbbH b2035 0.27 +0.3 2,104,398 - wbbH b2035 0.27 -0.5 2,104,403 - wbbH b2035 0.27 -1.0 2,104,411 - wbbH b2035 0.28 -0.2 2,104,411 - wbbH b2035 0.28 +0.8 2,104,416 - wbbH b2035 0.28 +0.5 2,104,416 - wbbH b2035 0.28 +1.6 2,104,451 - wbbH b2035 0.31 -0.2 2,104,505 - wbbH b2035 0.36 +0.1 2,104,546 - wbbH b2035 0.40 +0.0 2,104,546 - wbbH b2035 0.40 -0.8 2,104,556 - wbbH b2035 0.40 -1.2 2,104,584 - wbbH b2035 0.43 +0.1 2,104,584 - wbbH b2035 0.43 +0.6 2,104,584 - wbbH b2035 0.43 +0.1 2,104,584 - wbbH b2035 0.43 -0.2 2,104,603 - wbbH b2035 0.44 -0.4 2,104,632 - wbbH b2035 0.47 -0.5 2,104,633 - wbbH b2035 0.47 +1.3 2,104,633 - wbbH b2035 0.47 +1.3 2,104,656 - wbbH b2035 0.49 +0.2 2,104,657 - wbbH b2035 0.49 +0.1 2,104,751 - wbbH b2035 0.57 +0.2 2,104,815 - wbbH b2035 0.63 -0.2 2,104,842 - wbbH b2035 0.65 -0.4 2,104,853 - wbbH b2035 0.66 -0.2 2,104,853 - wbbH b2035 0.66 +0.2 2,104,859 - wbbH b2035 0.66 +0.5 2,104,891 - wbbH b2035 0.69 -0.1 2,104,891 - wbbH b2035 0.69 -0.3 2,104,891 - wbbH b2035 0.69 +0.6 2,104,891 - wbbH b2035 0.69 -1.0 2,104,901 - wbbH b2035 0.70 -0.1 2,104,901 - wbbH b2035 0.70 +0.0 2,104,906 - wbbH b2035 0.70 -0.7 2,104,923 - wbbH b2035 0.72 +0.1 2,104,923 - wbbH b2035 0.72 +0.4 2,104,923 - wbbH b2035 0.72 +0.1 2,104,923 - wbbH b2035 0.72 +0.2 2,104,923 - wbbH b2035 0.72 -1.0 2,104,955 - wbbH b2035 0.75 -0.3 2,104,955 - wbbH b2035 0.75 -0.1 2,104,955 - wbbH b2035 0.75 -0.3 2,104,955 - wbbH b2035 0.75 +0.1 2,104,955 - wbbH b2035 0.75 +0.6 2,104,962 - wbbH b2035 0.75 +0.1 2,104,962 - wbbH b2035 0.75 +0.1 2,104,962 - wbbH b2035 0.75 +0.5 2,104,962 - wbbH b2035 0.75 +0.9 2,104,972 - wbbH b2035 0.76 +0.4 2,105,044 - wbbH b2035 0.82 +0.0 2,105,044 - wbbH b2035 0.82 +1.0 2,105,078 - wbbH b2035 0.85 -0.4 2,105,143 - -0.1 2,105,143 - +0.8 2,105,235 - +0.6 2,105,243 - +0.5 2,105,243 - +0.4 2,105,243 - -0.6 2,105,248 - +0.1 2,105,301 - -0.2 2,105,301 - -1.1 2,105,370 - glf b2036 0.11 -0.0 2,105,370 - glf b2036 0.11 -0.6 2,105,427 - glf b2036 0.16 +0.4 2,105,450 - glf b2036 0.18 -0.1 2,105,450 - glf b2036 0.18 -1.0 2,105,460 - glf b2036 0.19 +0.3 2,105,460 - glf b2036 0.19 +0.1 2,105,482 - glf b2036 0.21 -0.4 2,105,493 - glf b2036 0.22 -0.2 2,105,624 - glf b2036 0.34 +0.6 2,105,649 - glf b2036 0.36 +0.5 2,105,649 - glf b2036 0.36 -0.4 2,105,649 - glf b2036 0.36 -0.3 2,105,652 - glf b2036 0.36 -0.6 2,105,652 - glf b2036 0.36 -1.5 2,105,654 - glf b2036 0.37 +0.1 2,105,654 - glf b2036 0.37 +0.0 2,105,673 - glf b2036 0.38 +0.2 2,105,673 - glf b2036 0.38 -0.5 2,105,673 - glf b2036 0.38 +1.0 2,105,673 - glf b2036 0.38 +0.4 2,105,673 - glf b2036 0.38 -0.3 2,105,673 - glf b2036 0.38 +0.0 2,105,673 - glf b2036 0.38 -0.3 2,105,673 - glf b2036 0.38 +0.4 2,105,682 - glf b2036 0.39 +0.6 2,105,770 - glf b2036 0.47 +0.2 2,105,773 - glf b2036 0.47 +0.5 2,105,773 - glf b2036 0.47 -0.4 2,105,773 - glf b2036 0.47 +0.0 2,105,773 - glf b2036 0.47 +0.3 2,105,799 - glf b2036 0.50 +0.6 2,105,799 - glf b2036 0.50 -0.5 2,105,799 - glf b2036 0.50 +0.3 2,105,881 - glf b2036 0.57 +0.1 2,105,892 - glf b2036 0.58 -0.4 2,105,892 - glf b2036 0.58 +0.2 2,105,907 - glf b2036 0.60 -0.2 2,105,928 - glf b2036 0.61 +0.3 2,105,930 - glf b2036 0.62 -0.3 2,105,946 - glf b2036 0.63 +0.4 2,105,990 - glf b2036 0.67 +0.9 2,106,040 - glf b2036 0.72 -1.1 2,106,124 - glf b2036 0.79 -0.6 2,106,217 - glf b2036 0.88 -0.3 2,106,218 - glf b2036 0.88 +0.3 2,106,222 - glf b2036 0.88 -0.2 2,106,222 - glf b2036 0.88 -0.1 2,106,222 - glf b2036 0.88 +0.2 2,106,222 - glf b2036 0.88 -0.1 2,106,223 - glf b2036 0.88 +0.1 2,106,227 - glf b2036 0.88 +1.0 2,106,230 - glf b2036 0.89 -1.2 2,106,230 - glf b2036 0.89 +0.3 2,106,230 - glf b2036 0.89 +1.0 2,106,230 - glf b2036 0.89 +0.6 2,106,230 - glf b2036 0.89 +1.3 2,106,231 - glf b2036 0.89 +0.0 2,106,231 - glf b2036 0.89 -0.4 2,106,231 - glf b2036 0.89 +0.7 2,106,235 - glf b2036 0.89 -0.5 2,106,237 - glf b2036 0.89 -0.4 2,106,328 - +1.1 2,106,331 - +0.3 2,106,408 + +1.4 2,106,414 - +0.5 2,106,416 - +0.0 2,106,416 - -0.6 2,106,416 - +0.9 2,106,421 - +0.4 2,106,421 - +0.6 2,106,421 - +0.5 2,106,428 - -0.3 2,106,428 - +1.2 2,106,428 - +0.7 2,106,441 - +0.8 2,106,441 - -0.3 2,106,443 - -1.0 2,106,449 - +1.0 2,106,454 - +0.8 2,106,560 - rfbX b2037 0.16 +0.1 2,106,560 - rfbX b2037 0.16 -0.1 2,106,560 - rfbX b2037 0.16 +0.2 2,106,564 - rfbX b2037 0.16 +0.5 2,106,574 - rfbX b2037 0.17 +0.8 2,106,574 - rfbX b2037 0.17 -0.8 2,106,574 - rfbX b2037 0.17 -0.7 2,106,603 - rfbX b2037 0.19 +0.2 2,106,612 - rfbX b2037 0.20 +0.4 2,106,642 - rfbX b2037 0.23 +1.0 2,106,642 - rfbX b2037 0.23 +0.6 2,106,673 - rfbX b2037 0.25 +0.1 2,106,673 - rfbX b2037 0.25 +0.4 2,106,674 - rfbX b2037 0.25 -1.8 2,106,674 - rfbX b2037 0.25 +0.7 2,106,674 - rfbX b2037 0.25 +0.0 2,106,674 - rfbX b2037 0.25 +0.3 2,106,674 - rfbX b2037 0.25 +0.7 2,106,674 - rfbX b2037 0.25 +0.7 2,106,726 - rfbX b2037 0.29 +0.6 2,106,760 - rfbX b2037 0.32 +0.0 2,106,764 - rfbX b2037 0.32 -0.2 2,106,769 - rfbX b2037 0.33 -0.3 2,106,771 - rfbX b2037 0.33 +0.6 2,106,771 - rfbX b2037 0.33 +0.6 2,106,784 - rfbX b2037 0.34 +0.2 2,106,817 - rfbX b2037 0.37 +0.4 2,106,817 - rfbX b2037 0.37 +0.0 2,106,848 - rfbX b2037 0.39 +0.6 2,106,862 - rfbX b2037 0.40 -0.8 2,106,862 - rfbX b2037 0.40 +1.9 2,106,988 - rfbX b2037 0.50 +0.0 2,106,989 - rfbX b2037 0.50 +0.8 2,106,989 - rfbX b2037 0.50 +0.3 2,107,009 - rfbX b2037 0.52 -0.1 2,107,009 - rfbX b2037 0.52 -0.4 2,107,142 - rfbX b2037 0.63 +1.9 2,107,155 - rfbX b2037 0.64 +0.8 2,107,198 - rfbX b2037 0.67 +0.2 2,107,211 - rfbX b2037 0.68 +0.7 2,107,222 - rfbX b2037 0.69 +1.5 2,107,249 - rfbX b2037 0.71 +0.2 2,107,257 - rfbX b2037 0.72 +0.5 2,107,314 - rfbX b2037 0.76 +2.0 2,107,314 - rfbX b2037 0.76 +1.0 2,107,319 - rfbX b2037 0.77 +0.8
Or see this region's nucleotide sequence