Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21395

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21385 and CA264_21390 are separated by 1 nucleotidesCA264_21390 and CA264_21395 are separated by 88 nucleotidesCA264_21395 and CA264_21400 are separated by 480 nucleotides CA264_21385: CA264_21385 - hypothetical protein, at 140,995 to 141,591 _21385 CA264_21390: CA264_21390 - hypothetical protein, at 141,593 to 142,033 _21390 CA264_21395: CA264_21395 - hypothetical protein, at 142,122 to 142,967 _21395 CA264_21400: CA264_21400 - hypothetical protein, at 143,448 to 145,292 _21400 Position (kb) 142 143Strain fitness (log2 ratio) -2 -1 0 1 2 3at 141.266 kb on - strand, within CA264_21385at 141.266 kb on - strand, within CA264_21385at 141.266 kb on - strand, within CA264_21385at 141.280 kb on - strand, within CA264_21385at 141.385 kb on - strand, within CA264_21385at 141.406 kb on + strand, within CA264_21385at 141.486 kb on - strand, within CA264_21385at 142.189 kb on + strandat 142.190 kb on - strandat 142.209 kb on + strand, within CA264_21395at 142.250 kb on - strand, within CA264_21395at 142.253 kb on + strand, within CA264_21395at 142.253 kb on + strand, within CA264_21395at 142.254 kb on - strand, within CA264_21395at 142.277 kb on - strand, within CA264_21395at 142.322 kb on + strand, within CA264_21395at 142.381 kb on - strand, within CA264_21395at 142.391 kb on + strand, within CA264_21395at 142.612 kb on + strand, within CA264_21395at 142.717 kb on + strand, within CA264_21395at 142.752 kb on - strand, within CA264_21395at 142.752 kb on - strand, within CA264_21395at 142.777 kb on + strand, within CA264_21395at 142.778 kb on - strand, within CA264_21395at 142.778 kb on - strand, within CA264_21395at 142.782 kb on + strand, within CA264_21395at 142.782 kb on + strand, within CA264_21395at 142.789 kb on + strand, within CA264_21395at 142.852 kb on + strand, within CA264_21395at 142.852 kb on + strand, within CA264_21395at 142.853 kb on - strand, within CA264_21395at 142.937 kb on - strandat 142.957 kb on - strandat 142.959 kb on + strandat 142.972 kb on + strandat 142.976 kb on - strandat 143.038 kb on + strandat 143.098 kb on + strandat 143.098 kb on + strandat 143.101 kb on + strandat 143.101 kb on + strandat 143.137 kb on + strandat 143.217 kb on + strandat 143.218 kb on - strandat 143.353 kb on - strandat 143.437 kb on + strandat 143.439 kb on + strandat 143.439 kb on + strandat 143.507 kb on + strandat 143.507 kb on + strandat 143.509 kb on + strandat 143.517 kb on + strandat 143.518 kb on - strandat 143.518 kb on - strandat 143.614 kb on - strandat 143.614 kb on - strandat 143.614 kb on - strandat 143.614 kb on - strandat 143.622 kb on - strandat 143.654 kb on + strand, within CA264_21400at 143.661 kb on - strand, within CA264_21400at 143.724 kb on - strand, within CA264_21400at 143.739 kb on + strand, within CA264_21400at 143.769 kb on + strand, within CA264_21400at 143.770 kb on - strand, within CA264_21400at 143.770 kb on - strand, within CA264_21400at 143.826 kb on + strand, within CA264_21400at 143.840 kb on + strand, within CA264_21400at 143.841 kb on - strand, within CA264_21400at 143.841 kb on - strand, within CA264_21400at 143.846 kb on - strand, within CA264_21400at 143.850 kb on - strand, within CA264_21400at 143.861 kb on - strand, within CA264_21400

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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141,266 - CA264_21385 0.45 -0.3
141,266 - CA264_21385 0.45 -0.2
141,266 - CA264_21385 0.45 +0.4
141,280 - CA264_21385 0.48 +0.1
141,385 - CA264_21385 0.65 -0.3
141,406 + CA264_21385 0.69 -1.4
141,486 - CA264_21385 0.82 -0.5
142,189 + +0.3
142,190 - +0.9
142,209 + CA264_21395 0.10 -0.4
142,250 - CA264_21395 0.15 +0.9
142,253 + CA264_21395 0.15 +2.9
142,253 + CA264_21395 0.15 -0.4
142,254 - CA264_21395 0.16 +0.5
142,277 - CA264_21395 0.18 -0.1
142,322 + CA264_21395 0.24 +0.9
142,381 - CA264_21395 0.31 +0.6
142,391 + CA264_21395 0.32 -0.3
142,612 + CA264_21395 0.58 -0.4
142,717 + CA264_21395 0.70 -1.1
142,752 - CA264_21395 0.74 -1.2
142,752 - CA264_21395 0.74 -0.4
142,777 + CA264_21395 0.77 -0.3
142,778 - CA264_21395 0.78 +0.0
142,778 - CA264_21395 0.78 -1.1
142,782 + CA264_21395 0.78 -0.5
142,782 + CA264_21395 0.78 +0.0
142,789 + CA264_21395 0.79 -0.7
142,852 + CA264_21395 0.86 -0.2
142,852 + CA264_21395 0.86 -0.2
142,853 - CA264_21395 0.86 -0.1
142,937 - -1.1
142,957 - -0.4
142,959 + -2.5
142,972 + -0.4
142,976 - -0.2
143,038 + +1.2
143,098 + -0.1
143,098 + -1.1
143,101 + +0.9
143,101 + +0.9
143,137 + -1.4
143,217 + -1.2
143,218 - -0.4
143,353 - +0.4
143,437 + +0.5
143,439 + +0.0
143,439 + +0.9
143,507 + -1.2
143,507 + +0.4
143,509 + +0.9
143,517 + +1.9
143,518 - -0.5
143,518 - -0.8
143,614 - -0.1
143,614 - -0.1
143,614 - +0.3
143,614 - +0.2
143,622 - +0.1
143,654 + CA264_21400 0.11 +0.7
143,661 - CA264_21400 0.12 +0.1
143,724 - CA264_21400 0.15 -0.1
143,739 + CA264_21400 0.16 -2.1
143,769 + CA264_21400 0.17 -0.1
143,770 - CA264_21400 0.17 -1.9
143,770 - CA264_21400 0.17 +0.3
143,826 + CA264_21400 0.20 +0.6
143,840 + CA264_21400 0.21 -0.4
143,841 - CA264_21400 0.21 -0.3
143,841 - CA264_21400 0.21 +0.9
143,846 - CA264_21400 0.22 +0.3
143,850 - CA264_21400 0.22 -0.1
143,861 - CA264_21400 0.22 +0.6

Or see this region's nucleotide sequence