Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21160 and CA264_21165 are separated by 622 nucleotides CA264_21165 and CA264_21170 are separated by 194 nucleotides
CA264_21160: CA264_21160 - sodium:calcium exchanger, at 97,978 to 99,357
_21160
CA264_21165: CA264_21165 - hypothetical protein, at 99,980 to 100,747
_21165
CA264_21170: CA264_21170 - hypothetical protein, at 100,942 to 101,574
_21170
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.990 kb on - strand, within CA264_21160 at 98.990 kb on - strand, within CA264_21160 at 98.990 kb on - strand, within CA264_21160 at 99.010 kb on + strand, within CA264_21160 at 99.011 kb on - strand, within CA264_21160 at 99.089 kb on + strand, within CA264_21160 at 99.139 kb on - strand, within CA264_21160 at 99.139 kb on - strand, within CA264_21160 at 99.139 kb on - strand, within CA264_21160 at 99.350 kb on - strand at 99.391 kb on + strand at 99.404 kb on + strand at 99.404 kb on + strand at 99.410 kb on + strand at 99.414 kb on + strand at 99.421 kb on + strand at 99.437 kb on + strand at 99.437 kb on + strand at 99.470 kb on + strand at 99.481 kb on + strand at 99.513 kb on + strand at 99.664 kb on + strand at 99.671 kb on + strand at 99.672 kb on - strand at 99.674 kb on - strand at 99.678 kb on + strand at 99.679 kb on - strand at 99.684 kb on + strand at 99.685 kb on - strand at 99.768 kb on - strand at 99.768 kb on - strand at 99.768 kb on - strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.785 kb on - strand at 99.790 kb on - strand at 99.810 kb on - strand at 99.814 kb on - strand at 99.832 kb on + strand at 99.832 kb on + strand at 99.833 kb on - strand at 99.834 kb on + strand at 99.835 kb on - strand at 99.862 kb on + strand at 99.862 kb on + strand at 99.961 kb on - strand at 100.008 kb on + strand at 100.009 kb on - strand at 100.039 kb on + strand at 100.040 kb on - strand at 100.049 kb on - strand at 100.078 kb on + strand, within CA264_21165 at 100.141 kb on - strand, within CA264_21165 at 100.174 kb on + strand, within CA264_21165 at 100.175 kb on - strand, within CA264_21165 at 100.187 kb on - strand, within CA264_21165 at 100.187 kb on - strand, within CA264_21165 at 100.223 kb on + strand, within CA264_21165 at 100.223 kb on + strand, within CA264_21165 at 100.223 kb on + strand, within CA264_21165 at 100.223 kb on + strand, within CA264_21165 at 100.224 kb on - strand, within CA264_21165 at 100.224 kb on - strand, within CA264_21165 at 100.385 kb on + strand, within CA264_21165 at 100.385 kb on + strand, within CA264_21165 at 100.385 kb on + strand, within CA264_21165 at 100.386 kb on - strand, within CA264_21165 at 100.386 kb on - strand, within CA264_21165 at 100.386 kb on - strand, within CA264_21165 at 100.425 kb on + strand, within CA264_21165 at 100.460 kb on - strand, within CA264_21165 at 100.502 kb on + strand, within CA264_21165 at 100.542 kb on + strand, within CA264_21165 at 100.558 kb on + strand, within CA264_21165 at 100.559 kb on - strand, within CA264_21165 at 100.567 kb on + strand, within CA264_21165 at 100.568 kb on - strand, within CA264_21165 at 100.651 kb on - strand, within CA264_21165 at 100.673 kb on + strand at 100.755 kb on - strand at 100.764 kb on + strand at 100.767 kb on + strand at 100.768 kb on - strand at 100.830 kb on - strand at 100.838 kb on + strand at 100.839 kb on - strand at 100.894 kb on + strand at 100.894 kb on + strand at 100.895 kb on - strand at 100.895 kb on - strand at 100.895 kb on - strand at 100.895 kb on - strand at 100.924 kb on + strand at 100.933 kb on - strand at 100.933 kb on - strand at 100.933 kb on - strand at 100.941 kb on + strand at 100.957 kb on + strand at 100.986 kb on - strand at 100.995 kb on + strand at 101.019 kb on - strand, within CA264_21170 at 101.067 kb on - strand, within CA264_21170 at 101.074 kb on + strand, within CA264_21170 at 101.075 kb on - strand, within CA264_21170 at 101.075 kb on - strand, within CA264_21170 at 101.078 kb on + strand, within CA264_21170 at 101.127 kb on - strand, within CA264_21170 at 101.260 kb on + strand, within CA264_21170 at 101.261 kb on - strand, within CA264_21170 at 101.275 kb on - strand, within CA264_21170 at 101.321 kb on + strand, within CA264_21170 at 101.379 kb on - strand, within CA264_21170 at 101.417 kb on + strand, within CA264_21170 at 101.418 kb on - strand, within CA264_21170 at 101.418 kb on - strand, within CA264_21170 at 101.475 kb on + strand, within CA264_21170 at 101.475 kb on + strand, within CA264_21170 at 101.476 kb on - strand, within CA264_21170 at 101.506 kb on + strand, within CA264_21170 at 101.507 kb on - strand, within CA264_21170 at 101.507 kb on - strand, within CA264_21170 at 101.507 kb on - strand, within CA264_21170 at 101.507 kb on - strand, within CA264_21170 at 101.509 kb on + strand, within CA264_21170 at 101.509 kb on + strand, within CA264_21170 at 101.510 kb on - strand, within CA264_21170 at 101.510 kb on - strand, within CA264_21170 at 101.514 kb on + strand at 101.515 kb on - strand at 101.515 kb on - strand at 101.565 kb on + strand at 101.565 kb on + strand at 101.575 kb on + strand at 101.592 kb on + strand at 101.592 kb on + strand at 101.592 kb on + strand at 101.592 kb on + strand at 101.593 kb on - strand at 101.593 kb on - strand at 101.593 kb on - strand at 101.593 kb on - strand at 101.593 kb on - strand at 101.615 kb on + strand at 101.668 kb on + strand at 101.668 kb on + strand at 101.669 kb on - strand at 101.669 kb on - strand at 101.669 kb on - strand at 101.669 kb on - strand at 101.672 kb on + strand at 101.713 kb on + strand at 101.713 kb on + strand at 101.714 kb on - strand at 101.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 98,990 - CA264_21160 0.73 -0.0 98,990 - CA264_21160 0.73 +0.9 98,990 - CA264_21160 0.73 +0.1 99,010 + CA264_21160 0.75 -0.1 99,011 - CA264_21160 0.75 -0.5 99,089 + CA264_21160 0.81 +0.3 99,139 - CA264_21160 0.84 +1.4 99,139 - CA264_21160 0.84 +0.2 99,139 - CA264_21160 0.84 -0.0 99,350 - +0.7 99,391 + +0.0 99,404 + +0.4 99,404 + -0.1 99,410 + -1.7 99,414 + +0.4 99,421 + -0.6 99,437 + -0.4 99,437 + -0.3 99,470 + +0.2 99,481 + +1.7 99,513 + -0.7 99,664 + -0.1 99,671 + +0.9 99,672 - +0.9 99,674 - -0.2 99,678 + -0.4 99,679 - -0.7 99,684 + +0.9 99,685 - -0.3 99,768 - -0.6 99,768 - +0.9 99,768 - -1.1 99,770 + -1.4 99,770 + -0.2 99,785 - -0.7 99,790 - +0.7 99,810 - +0.7 99,814 - +0.3 99,832 + +0.9 99,832 + -0.5 99,833 - +0.5 99,834 + +0.1 99,835 - +0.3 99,862 + -1.3 99,862 + +0.4 99,961 - +0.4 100,008 + +0.5 100,009 - +0.3 100,039 + -0.4 100,040 - -0.3 100,049 - -0.0 100,078 + CA264_21165 0.13 -1.9 100,141 - CA264_21165 0.21 -0.7 100,174 + CA264_21165 0.25 -0.7 100,175 - CA264_21165 0.25 -1.1 100,187 - CA264_21165 0.27 -0.1 100,187 - CA264_21165 0.27 -2.7 100,223 + CA264_21165 0.32 -0.7 100,223 + CA264_21165 0.32 -0.4 100,223 + CA264_21165 0.32 -2.3 100,223 + CA264_21165 0.32 -0.3 100,224 - CA264_21165 0.32 +0.6 100,224 - CA264_21165 0.32 +0.0 100,385 + CA264_21165 0.53 -0.3 100,385 + CA264_21165 0.53 +1.9 100,385 + CA264_21165 0.53 -0.7 100,386 - CA264_21165 0.53 -0.8 100,386 - CA264_21165 0.53 -1.3 100,386 - CA264_21165 0.53 +0.9 100,425 + CA264_21165 0.58 -0.3 100,460 - CA264_21165 0.62 +2.2 100,502 + CA264_21165 0.68 -0.8 100,542 + CA264_21165 0.73 +0.8 100,558 + CA264_21165 0.75 +0.5 100,559 - CA264_21165 0.75 -0.7 100,567 + CA264_21165 0.76 -0.4 100,568 - CA264_21165 0.77 -1.2 100,651 - CA264_21165 0.87 +0.7 100,673 + -1.9 100,755 - +0.4 100,764 + +0.6 100,767 + -0.4 100,768 - -0.5 100,830 - -0.0 100,838 + +0.3 100,839 - -0.1 100,894 + -0.4 100,894 + +0.0 100,895 - -0.8 100,895 - -0.1 100,895 - +0.4 100,895 - +0.5 100,924 + -1.6 100,933 - +0.1 100,933 - -1.3 100,933 - -0.7 100,941 + +1.3 100,957 + -1.7 100,986 - +0.3 100,995 + -1.1 101,019 - CA264_21170 0.12 -0.1 101,067 - CA264_21170 0.20 +0.0 101,074 + CA264_21170 0.21 -0.4 101,075 - CA264_21170 0.21 +0.9 101,075 - CA264_21170 0.21 +0.3 101,078 + CA264_21170 0.21 -0.1 101,127 - CA264_21170 0.29 +0.9 101,260 + CA264_21170 0.50 -0.2 101,261 - CA264_21170 0.50 -0.3 101,275 - CA264_21170 0.53 -0.1 101,321 + CA264_21170 0.60 +0.5 101,379 - CA264_21170 0.69 +0.1 101,417 + CA264_21170 0.75 +0.0 101,418 - CA264_21170 0.75 +0.5 101,418 - CA264_21170 0.75 -1.7 101,475 + CA264_21170 0.84 +0.2 101,475 + CA264_21170 0.84 +0.2 101,476 - CA264_21170 0.84 +0.2 101,506 + CA264_21170 0.89 -0.4 101,507 - CA264_21170 0.89 +0.2 101,507 - CA264_21170 0.89 +1.1 101,507 - CA264_21170 0.89 +0.1 101,507 - CA264_21170 0.89 -0.6 101,509 + CA264_21170 0.90 +0.5 101,509 + CA264_21170 0.90 +0.5 101,510 - CA264_21170 0.90 +0.9 101,510 - CA264_21170 0.90 -0.3 101,514 + -1.7 101,515 - -0.5 101,515 - -0.4 101,565 + +0.3 101,565 + -0.9 101,575 + -0.1 101,592 + -0.1 101,592 + -0.3 101,592 + -0.9 101,592 + -2.4 101,593 - -1.1 101,593 - +1.6 101,593 - -0.3 101,593 - +0.0 101,593 - -0.1 101,615 + +0.2 101,668 + +0.6 101,668 + -0.5 101,669 - -0.8 101,669 - +1.2 101,669 - +1.7 101,669 - -0.3 101,672 + -0.2 101,713 + -0.0 101,713 + -0.0 101,714 - -0.3 101,714 - -0.7
Or see this region's nucleotide sequence