Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20755 and CA264_20760 are separated by 240 nucleotides CA264_20760 and CA264_20765 overlap by 13 nucleotides CA264_20765 and CA264_20770 are separated by 3 nucleotides
CA264_20755: CA264_20755 - hypothetical protein, at 11,268 to 12,029
_20755
CA264_20760: CA264_20760 - hypothetical protein, at 12,270 to 13,040
_20760
CA264_20765: CA264_20765 - hypothetical protein, at 13,028 to 13,789
_20765
CA264_20770: CA264_20770 - oxidoreductase, at 13,793 to 15,757
_20770
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1 at 11.279 kb on + strand at 11.280 kb on - strand at 11.332 kb on - strand at 11.332 kb on - strand at 11.333 kb on + strand at 11.333 kb on + strand at 11.334 kb on - strand at 11.385 kb on - strand, within CA264_20755 at 11.385 kb on - strand, within CA264_20755 at 11.388 kb on + strand, within CA264_20755 at 11.394 kb on + strand, within CA264_20755 at 11.394 kb on + strand, within CA264_20755 at 11.411 kb on + strand, within CA264_20755 at 11.418 kb on - strand, within CA264_20755 at 11.420 kb on + strand, within CA264_20755 at 11.420 kb on + strand, within CA264_20755 at 11.421 kb on - strand, within CA264_20755 at 11.463 kb on + strand, within CA264_20755 at 11.464 kb on - strand, within CA264_20755 at 11.464 kb on - strand, within CA264_20755 at 11.489 kb on + strand, within CA264_20755 at 11.489 kb on + strand, within CA264_20755 at 11.489 kb on + strand, within CA264_20755 at 11.490 kb on - strand, within CA264_20755 at 11.492 kb on - strand, within CA264_20755 at 11.533 kb on + strand, within CA264_20755 at 11.555 kb on + strand, within CA264_20755 at 11.584 kb on - strand, within CA264_20755 at 11.607 kb on - strand, within CA264_20755 at 11.661 kb on + strand, within CA264_20755 at 11.698 kb on - strand, within CA264_20755 at 11.699 kb on + strand, within CA264_20755 at 11.700 kb on - strand, within CA264_20755 at 11.745 kb on - strand, within CA264_20755 at 11.751 kb on - strand, within CA264_20755 at 11.788 kb on + strand, within CA264_20755 at 11.808 kb on - strand, within CA264_20755 at 11.917 kb on + strand, within CA264_20755 at 11.918 kb on - strand, within CA264_20755 at 11.922 kb on + strand, within CA264_20755 at 11.928 kb on + strand, within CA264_20755 at 11.934 kb on + strand, within CA264_20755 at 11.996 kb on + strand at 11.996 kb on + strand at 11.996 kb on + strand at 12.009 kb on + strand at 12.009 kb on + strand at 12.010 kb on - strand at 12.115 kb on + strand at 12.120 kb on - strand at 12.120 kb on - strand at 12.146 kb on - strand at 12.181 kb on + strand at 12.184 kb on - strand at 12.186 kb on + strand at 12.187 kb on - strand at 12.255 kb on + strand at 12.256 kb on - strand at 12.317 kb on + strand at 12.318 kb on - strand at 12.334 kb on + strand at 12.334 kb on + strand at 12.348 kb on + strand, within CA264_20760 at 12.348 kb on + strand, within CA264_20760 at 12.606 kb on - strand, within CA264_20760 at 12.612 kb on + strand, within CA264_20760 at 12.634 kb on - strand, within CA264_20760 at 12.729 kb on + strand, within CA264_20760 at 12.729 kb on + strand, within CA264_20760 at 12.729 kb on + strand, within CA264_20760 at 12.730 kb on - strand, within CA264_20760 at 12.749 kb on + strand, within CA264_20760 at 12.876 kb on - strand, within CA264_20760 at 12.931 kb on - strand, within CA264_20760 at 12.931 kb on - strand, within CA264_20760 at 12.953 kb on + strand, within CA264_20760 at 12.954 kb on - strand, within CA264_20760 at 12.954 kb on - strand, within CA264_20760 at 12.956 kb on + strand, within CA264_20760 at 12.957 kb on - strand, within CA264_20760 at 12.957 kb on - strand, within CA264_20760 at 12.972 kb on - strand at 12.972 kb on - strand at 12.975 kb on - strand at 12.978 kb on + strand at 13.012 kb on - strand at 13.012 kb on - strand at 13.012 kb on - strand at 13.012 kb on - strand at 13.016 kb on + strand at 13.111 kb on + strand, within CA264_20765 at 13.119 kb on + strand, within CA264_20765 at 13.170 kb on + strand, within CA264_20765 at 13.202 kb on + strand, within CA264_20765 at 13.203 kb on - strand, within CA264_20765 at 13.264 kb on + strand, within CA264_20765 at 13.267 kb on + strand, within CA264_20765 at 13.267 kb on + strand, within CA264_20765 at 13.267 kb on + strand, within CA264_20765 at 13.268 kb on - strand, within CA264_20765 at 13.302 kb on + strand, within CA264_20765 at 13.302 kb on + strand, within CA264_20765 at 13.303 kb on - strand, within CA264_20765 at 13.354 kb on - strand, within CA264_20765 at 13.354 kb on - strand, within CA264_20765 at 13.354 kb on - strand, within CA264_20765 at 13.411 kb on - strand, within CA264_20765 at 13.422 kb on + strand, within CA264_20765 at 13.423 kb on - strand, within CA264_20765 at 13.446 kb on - strand, within CA264_20765 at 13.450 kb on + strand, within CA264_20765 at 13.523 kb on + strand, within CA264_20765 at 13.523 kb on + strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.525 kb on + strand, within CA264_20765 at 13.526 kb on - strand, within CA264_20765 at 13.543 kb on + strand, within CA264_20765 at 13.545 kb on + strand, within CA264_20765 at 13.545 kb on + strand, within CA264_20765 at 13.546 kb on - strand, within CA264_20765 at 13.546 kb on - strand, within CA264_20765 at 13.546 kb on - strand, within CA264_20765 at 13.560 kb on - strand, within CA264_20765 at 13.742 kb on - strand at 13.768 kb on + strand at 13.790 kb on - strand at 13.790 kb on - strand at 13.883 kb on + strand at 13.884 kb on - strand at 13.884 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.928 kb on - strand at 13.953 kb on + strand at 13.954 kb on - strand at 13.960 kb on + strand at 13.961 kb on - strand at 13.964 kb on + strand at 13.964 kb on + strand at 13.965 kb on - strand at 14.010 kb on - strand, within CA264_20770
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 11,279 + +0.2 11,280 - +1.1 11,332 - +0.0 11,332 - -0.3 11,333 + -0.8 11,333 + -1.1 11,334 - +0.2 11,385 - CA264_20755 0.15 -0.1 11,385 - CA264_20755 0.15 -0.4 11,388 + CA264_20755 0.16 +0.9 11,394 + CA264_20755 0.17 -0.2 11,394 + CA264_20755 0.17 -0.8 11,411 + CA264_20755 0.19 -0.9 11,418 - CA264_20755 0.20 -0.3 11,420 + CA264_20755 0.20 -1.9 11,420 + CA264_20755 0.20 +0.9 11,421 - CA264_20755 0.20 +0.2 11,463 + CA264_20755 0.26 -0.4 11,464 - CA264_20755 0.26 -1.3 11,464 - CA264_20755 0.26 +0.5 11,489 + CA264_20755 0.29 -0.4 11,489 + CA264_20755 0.29 +0.5 11,489 + CA264_20755 0.29 -0.1 11,490 - CA264_20755 0.29 +0.3 11,492 - CA264_20755 0.29 -0.1 11,533 + CA264_20755 0.35 -0.9 11,555 + CA264_20755 0.38 +0.3 11,584 - CA264_20755 0.41 -0.9 11,607 - CA264_20755 0.44 +0.6 11,661 + CA264_20755 0.52 +1.6 11,698 - CA264_20755 0.56 -1.1 11,699 + CA264_20755 0.57 +0.6 11,700 - CA264_20755 0.57 +0.5 11,745 - CA264_20755 0.63 +0.1 11,751 - CA264_20755 0.63 +0.1 11,788 + CA264_20755 0.68 +0.9 11,808 - CA264_20755 0.71 -0.6 11,917 + CA264_20755 0.85 +0.9 11,918 - CA264_20755 0.85 -0.7 11,922 + CA264_20755 0.86 +0.5 11,928 + CA264_20755 0.87 +0.3 11,934 + CA264_20755 0.87 +0.9 11,996 + -0.2 11,996 + -0.6 11,996 + +0.4 12,009 + +0.9 12,009 + +0.1 12,010 - -0.1 12,115 + +1.5 12,120 - -0.7 12,120 - -0.8 12,146 - -0.6 12,181 + -0.7 12,184 - +0.7 12,186 + -0.2 12,187 - -2.4 12,255 + +0.1 12,256 - +0.9 12,317 + -1.4 12,318 - -0.6 12,334 + +0.4 12,334 + -1.4 12,348 + CA264_20760 0.10 -0.4 12,348 + CA264_20760 0.10 -0.4 12,606 - CA264_20760 0.44 -0.1 12,612 + CA264_20760 0.44 +1.6 12,634 - CA264_20760 0.47 -0.7 12,729 + CA264_20760 0.60 +0.2 12,729 + CA264_20760 0.60 -0.1 12,729 + CA264_20760 0.60 -1.0 12,730 - CA264_20760 0.60 -0.5 12,749 + CA264_20760 0.62 +0.6 12,876 - CA264_20760 0.79 -1.2 12,931 - CA264_20760 0.86 -0.6 12,931 - CA264_20760 0.86 -1.1 12,953 + CA264_20760 0.89 -0.4 12,954 - CA264_20760 0.89 +0.7 12,954 - CA264_20760 0.89 +0.1 12,956 + CA264_20760 0.89 +0.9 12,957 - CA264_20760 0.89 -1.1 12,957 - CA264_20760 0.89 -0.6 12,972 - -1.2 12,972 - -0.1 12,975 - +0.7 12,978 + -1.7 13,012 - +0.0 13,012 - -0.7 13,012 - +0.2 13,012 - -0.3 13,016 + +0.9 13,111 + CA264_20765 0.11 -2.1 13,119 + CA264_20765 0.12 -0.3 13,170 + CA264_20765 0.19 -0.3 13,202 + CA264_20765 0.23 -0.2 13,203 - CA264_20765 0.23 +0.6 13,264 + CA264_20765 0.31 +0.6 13,267 + CA264_20765 0.31 +0.1 13,267 + CA264_20765 0.31 -0.7 13,267 + CA264_20765 0.31 +1.1 13,268 - CA264_20765 0.31 -0.7 13,302 + CA264_20765 0.36 -0.2 13,302 + CA264_20765 0.36 +0.4 13,303 - CA264_20765 0.36 -0.9 13,354 - CA264_20765 0.43 -0.1 13,354 - CA264_20765 0.43 -0.4 13,354 - CA264_20765 0.43 -0.3 13,411 - CA264_20765 0.50 -0.1 13,422 + CA264_20765 0.52 -0.5 13,423 - CA264_20765 0.52 +0.9 13,446 - CA264_20765 0.55 -0.4 13,450 + CA264_20765 0.55 -0.1 13,523 + CA264_20765 0.65 +0.6 13,523 + CA264_20765 0.65 -0.6 13,524 - CA264_20765 0.65 -0.5 13,524 - CA264_20765 0.65 +0.6 13,524 - CA264_20765 0.65 -1.7 13,524 - CA264_20765 0.65 +0.5 13,524 - CA264_20765 0.65 -0.4 13,524 - CA264_20765 0.65 +0.3 13,525 + CA264_20765 0.65 -1.0 13,526 - CA264_20765 0.65 -0.7 13,543 + CA264_20765 0.68 -1.3 13,545 + CA264_20765 0.68 -2.0 13,545 + CA264_20765 0.68 +0.4 13,546 - CA264_20765 0.68 -0.1 13,546 - CA264_20765 0.68 +0.5 13,546 - CA264_20765 0.68 -1.0 13,560 - CA264_20765 0.70 -0.9 13,742 - -0.3 13,768 + +1.0 13,790 - +0.3 13,790 - -0.6 13,883 + +0.9 13,884 - -0.5 13,884 - -1.2 13,896 - -0.3 13,896 - +0.7 13,896 - +0.7 13,928 - -0.9 13,953 + +0.6 13,954 - -0.8 13,960 + +0.5 13,961 - -1.8 13,964 + +0.5 13,964 + -0.1 13,965 - -0.3 14,010 - CA264_20770 0.11 -0.4
Or see this region's nucleotide sequence