Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17585

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17580 and CA264_17585 are separated by 180 nucleotidesCA264_17585 and CA264_17590 are separated by 77 nucleotidesCA264_17590 and CA264_17595 are separated by 47 nucleotides CA264_17580: CA264_17580 - glutamate--tRNA ligase, at 4,095,491 to 4,097,032 _17580 CA264_17585: CA264_17585 - ribonuclease BN, at 4,097,213 to 4,098,238 _17585 CA264_17590: CA264_17590 - RidA family protein, at 4,098,316 to 4,098,696 _17590 CA264_17595: CA264_17595 - 3-hydroxyacyl-CoA dehydrogenase, at 4,098,744 to 4,099,421 _17595 Position (kb) 4097 4098 4099Strain fitness (log2 ratio) -2 -1 0 1 2at 4097.034 kb on + strandat 4097.034 kb on + strandat 4097.035 kb on - strandat 4097.054 kb on + strandat 4097.094 kb on - strandat 4097.097 kb on + strandat 4097.115 kb on + strandat 4097.115 kb on + strandat 4097.116 kb on - strandat 4097.154 kb on + strandat 4097.162 kb on + strandat 4097.162 kb on + strandat 4097.163 kb on - strandat 4097.171 kb on - strandat 4097.186 kb on + strandat 4097.190 kb on - strandat 4097.191 kb on + strandat 4097.192 kb on - strandat 4097.199 kb on + strandat 4097.199 kb on + strandat 4097.217 kb on + strandat 4097.217 kb on + strandat 4097.221 kb on + strandat 4097.222 kb on - strandat 4097.231 kb on + strandat 4097.243 kb on + strandat 4097.244 kb on - strandat 4097.250 kb on + strandat 4097.251 kb on - strandat 4097.261 kb on + strandat 4097.261 kb on + strandat 4097.261 kb on + strandat 4097.262 kb on - strandat 4097.272 kb on + strandat 4097.312 kb on + strandat 4097.315 kb on + strandat 4097.316 kb on - strand, within CA264_17585at 4097.403 kb on + strand, within CA264_17585at 4097.403 kb on + strand, within CA264_17585at 4097.404 kb on - strand, within CA264_17585at 4097.404 kb on - strand, within CA264_17585at 4097.405 kb on + strand, within CA264_17585at 4097.405 kb on + strand, within CA264_17585at 4097.405 kb on + strand, within CA264_17585at 4097.406 kb on - strand, within CA264_17585at 4097.408 kb on + strand, within CA264_17585at 4097.409 kb on - strand, within CA264_17585at 4097.472 kb on + strand, within CA264_17585at 4097.586 kb on + strand, within CA264_17585at 4097.586 kb on + strand, within CA264_17585at 4097.586 kb on + strand, within CA264_17585at 4097.609 kb on + strand, within CA264_17585at 4097.816 kb on - strand, within CA264_17585at 4097.816 kb on - strand, within CA264_17585at 4097.819 kb on + strand, within CA264_17585at 4097.819 kb on + strand, within CA264_17585at 4097.820 kb on - strand, within CA264_17585at 4097.879 kb on - strand, within CA264_17585at 4098.041 kb on + strand, within CA264_17585at 4098.068 kb on + strand, within CA264_17585at 4098.317 kb on + strandat 4098.611 kb on + strand, within CA264_17590at 4098.611 kb on + strand, within CA264_17590at 4098.611 kb on + strand, within CA264_17590at 4098.611 kb on + strand, within CA264_17590at 4098.612 kb on - strand, within CA264_17590at 4098.612 kb on - strand, within CA264_17590at 4098.628 kb on + strand, within CA264_17590at 4098.688 kb on - strandat 4098.688 kb on - strandat 4098.688 kb on - strandat 4098.688 kb on - strandat 4098.688 kb on - strandat 4098.688 kb on - strandat 4098.710 kb on + strandat 4098.710 kb on + strandat 4098.711 kb on - strandat 4098.717 kb on + strandat 4098.723 kb on + strandat 4098.743 kb on + strandat 4098.743 kb on + strandat 4098.744 kb on - strandat 4098.751 kb on + strandat 4098.751 kb on + strandat 4098.751 kb on + strandat 4098.752 kb on - strandat 4098.752 kb on - strandat 4098.752 kb on - strandat 4098.825 kb on + strand, within CA264_17595at 4098.826 kb on - strand, within CA264_17595at 4098.826 kb on - strand, within CA264_17595at 4098.827 kb on + strand, within CA264_17595at 4099.185 kb on - strand, within CA264_17595at 4099.185 kb on - strand, within CA264_17595at 4099.185 kb on - strand, within CA264_17595at 4099.209 kb on - strand, within CA264_17595at 4099.233 kb on - strand, within CA264_17595at 4099.234 kb on + strand, within CA264_17595

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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4,097,034 + -0.3
4,097,034 + +0.4
4,097,035 - -0.4
4,097,054 + -0.4
4,097,094 - +1.0
4,097,097 + -0.5
4,097,115 + -0.4
4,097,115 + -1.0
4,097,116 - -1.8
4,097,154 + +0.6
4,097,162 + -0.2
4,097,162 + +2.0
4,097,163 - +0.2
4,097,171 - -0.2
4,097,186 + +2.0
4,097,190 - -0.7
4,097,191 + +0.2
4,097,192 - +0.3
4,097,199 + -0.0
4,097,199 + -0.8
4,097,217 + -1.2
4,097,217 + -0.8
4,097,221 + -0.1
4,097,222 - +0.6
4,097,231 + -0.3
4,097,243 + -0.4
4,097,244 - +0.1
4,097,250 + -0.5
4,097,251 - -2.0
4,097,261 + -0.6
4,097,261 + +0.4
4,097,261 + +1.0
4,097,262 - +0.8
4,097,272 + -0.1
4,097,312 + +0.2
4,097,315 + -0.4
4,097,316 - CA264_17585 0.10 +0.2
4,097,403 + CA264_17585 0.19 +2.0
4,097,403 + CA264_17585 0.19 +1.0
4,097,404 - CA264_17585 0.19 +0.0
4,097,404 - CA264_17585 0.19 -0.2
4,097,405 + CA264_17585 0.19 +0.1
4,097,405 + CA264_17585 0.19 +1.0
4,097,405 + CA264_17585 0.19 -0.4
4,097,406 - CA264_17585 0.19 -1.0
4,097,408 + CA264_17585 0.19 -0.7
4,097,409 - CA264_17585 0.19 +0.7
4,097,472 + CA264_17585 0.25 -0.6
4,097,586 + CA264_17585 0.36 -0.8
4,097,586 + CA264_17585 0.36 -1.0
4,097,586 + CA264_17585 0.36 +0.6
4,097,609 + CA264_17585 0.39 -1.0
4,097,816 - CA264_17585 0.59 -0.6
4,097,816 - CA264_17585 0.59 -0.4
4,097,819 + CA264_17585 0.59 +0.8
4,097,819 + CA264_17585 0.59 -0.6
4,097,820 - CA264_17585 0.59 -0.1
4,097,879 - CA264_17585 0.65 -0.9
4,098,041 + CA264_17585 0.81 +1.6
4,098,068 + CA264_17585 0.83 -1.2
4,098,317 + -0.1
4,098,611 + CA264_17590 0.77 -0.9
4,098,611 + CA264_17590 0.77 -0.2
4,098,611 + CA264_17590 0.77 +0.8
4,098,611 + CA264_17590 0.77 -0.6
4,098,612 - CA264_17590 0.78 -1.6
4,098,612 - CA264_17590 0.78 -1.0
4,098,628 + CA264_17590 0.82 -2.3
4,098,688 - +1.4
4,098,688 - -1.0
4,098,688 - -0.4
4,098,688 - -0.4
4,098,688 - -0.9
4,098,688 - -0.3
4,098,710 + +0.2
4,098,710 + +1.0
4,098,711 - +0.3
4,098,717 + -0.4
4,098,723 + -0.2
4,098,743 + +0.3
4,098,743 + +0.3
4,098,744 - +0.7
4,098,751 + +2.0
4,098,751 + +0.4
4,098,751 + +2.6
4,098,752 - +2.0
4,098,752 - -0.8
4,098,752 - +1.0
4,098,825 + CA264_17595 0.12 +0.0
4,098,826 - CA264_17595 0.12 -0.7
4,098,826 - CA264_17595 0.12 +0.2
4,098,827 + CA264_17595 0.12 -1.0
4,099,185 - CA264_17595 0.65 -2.0
4,099,185 - CA264_17595 0.65 -0.4
4,099,185 - CA264_17595 0.65 +0.2
4,099,209 - CA264_17595 0.69 +0.4
4,099,233 - CA264_17595 0.72 +0.4
4,099,234 + CA264_17595 0.72 -0.2

Or see this region's nucleotide sequence