Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16500 and CA264_16505 are separated by 6 nucleotides CA264_16505 and CA264_16510 are separated by 86 nucleotides CA264_16510 and CA264_16515 are separated by 73 nucleotides
CA264_16500: CA264_16500 - hypothetical protein, at 3,835,122 to 3,835,559
_16500
CA264_16505: CA264_16505 - methanol dehydrogenase, at 3,835,566 to 3,836,339
_16505
CA264_16510: CA264_16510 - hypothetical protein, at 3,836,426 to 3,836,623
_16510
CA264_16515: CA264_16515 - histidine kinase, at 3,836,697 to 3,839,345
_16515
Position (kb)
3836
3837 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3835.465 kb on + strand, within CA264_16500 at 3835.557 kb on + strand at 3835.557 kb on + strand at 3835.565 kb on + strand at 3835.566 kb on - strand at 3835.584 kb on - strand at 3835.669 kb on - strand, within CA264_16505 at 3835.842 kb on + strand, within CA264_16505 at 3835.843 kb on - strand, within CA264_16505 at 3835.920 kb on + strand, within CA264_16505 at 3835.920 kb on + strand, within CA264_16505 at 3835.920 kb on + strand, within CA264_16505 at 3835.921 kb on - strand, within CA264_16505 at 3835.921 kb on - strand, within CA264_16505 at 3835.921 kb on - strand, within CA264_16505 at 3835.924 kb on + strand, within CA264_16505 at 3835.924 kb on + strand, within CA264_16505 at 3835.963 kb on + strand, within CA264_16505 at 3836.019 kb on - strand, within CA264_16505 at 3836.216 kb on - strand, within CA264_16505 at 3836.356 kb on + strand at 3836.356 kb on + strand at 3836.357 kb on - strand at 3836.365 kb on - strand at 3836.413 kb on - strand at 3836.636 kb on + strand at 3836.637 kb on - strand at 3836.646 kb on - strand at 3836.693 kb on - strand at 3836.693 kb on - strand at 3836.693 kb on - strand at 3836.719 kb on + strand at 3836.720 kb on - strand at 3836.720 kb on - strand at 3836.787 kb on + strand at 3836.787 kb on + strand at 3836.788 kb on - strand at 3836.788 kb on - strand at 3836.798 kb on + strand at 3836.798 kb on + strand at 3836.798 kb on + strand at 3836.798 kb on + strand at 3836.873 kb on + strand at 3836.969 kb on + strand, within CA264_16515 at 3836.978 kb on - strand, within CA264_16515 at 3837.035 kb on + strand, within CA264_16515 at 3837.079 kb on - strand, within CA264_16515 at 3837.373 kb on + strand, within CA264_16515 at 3837.385 kb on + strand, within CA264_16515 at 3837.386 kb on - strand, within CA264_16515 at 3837.386 kb on - strand, within CA264_16515 at 3837.391 kb on + strand, within CA264_16515 at 3837.490 kb on + strand, within CA264_16515 at 3837.491 kb on - strand, within CA264_16515
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 3,835,465 + CA264_16500 0.78 +1.0 3,835,557 + +0.4 3,835,557 + -1.0 3,835,565 + -0.3 3,835,566 - -0.6 3,835,584 - +0.3 3,835,669 - CA264_16505 0.13 +0.2 3,835,842 + CA264_16505 0.36 -0.5 3,835,843 - CA264_16505 0.36 +1.0 3,835,920 + CA264_16505 0.46 -0.2 3,835,920 + CA264_16505 0.46 -1.2 3,835,920 + CA264_16505 0.46 -0.0 3,835,921 - CA264_16505 0.46 +0.6 3,835,921 - CA264_16505 0.46 +1.0 3,835,921 - CA264_16505 0.46 -0.2 3,835,924 + CA264_16505 0.46 -1.8 3,835,924 + CA264_16505 0.46 -0.3 3,835,963 + CA264_16505 0.51 -0.3 3,836,019 - CA264_16505 0.59 -1.5 3,836,216 - CA264_16505 0.84 -0.7 3,836,356 + +2.0 3,836,356 + -0.3 3,836,357 - -1.6 3,836,365 - +0.1 3,836,413 - -1.3 3,836,636 + -0.6 3,836,637 - -0.3 3,836,646 - -0.3 3,836,693 - -0.3 3,836,693 - +0.9 3,836,693 - -0.2 3,836,719 + -0.4 3,836,720 - -0.0 3,836,720 - -0.6 3,836,787 + -0.9 3,836,787 + -0.2 3,836,788 - -1.2 3,836,788 - -0.7 3,836,798 + +0.1 3,836,798 + -0.1 3,836,798 + +0.2 3,836,798 + +0.1 3,836,873 + +0.6 3,836,969 + CA264_16515 0.10 -0.3 3,836,978 - CA264_16515 0.11 +0.1 3,837,035 + CA264_16515 0.13 -1.4 3,837,079 - CA264_16515 0.14 -1.4 3,837,373 + CA264_16515 0.26 -0.5 3,837,385 + CA264_16515 0.26 -1.3 3,837,386 - CA264_16515 0.26 -1.3 3,837,386 - CA264_16515 0.26 +0.3 3,837,391 + CA264_16515 0.26 -0.6 3,837,490 + CA264_16515 0.30 -0.2 3,837,491 - CA264_16515 0.30 -1.3
Or see this region's nucleotide sequence