Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15715

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15705 and CA264_15710 are separated by 153 nucleotidesCA264_15710 and CA264_15715 are separated by 3 nucleotidesCA264_15715 and CA264_15720 are separated by 201 nucleotidesCA264_15720 and CA264_15725 are separated by 45 nucleotides CA264_15705: CA264_15705 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 3,666,775 to 3,667,317 _15705 CA264_15710: CA264_15710 - hypothetical protein, at 3,667,471 to 3,668,205 _15710 CA264_15715: CA264_15715 - GTPase HflX, at 3,668,209 to 3,669,396 _15715 CA264_15720: CA264_15720 - phosphohistidine phosphatase, at 3,669,598 to 3,670,092 _15720 CA264_15725: CA264_15725 - polyphosphate kinase 1, at 3,670,138 to 3,672,252 _15725 Position (kb) 3668 3669 3670Strain fitness (log2 ratio) -1 0 1 2at 3667.325 kb on + strandat 3667.329 kb on + strandat 3667.329 kb on + strandat 3667.330 kb on - strandat 3667.356 kb on + strandat 3667.356 kb on + strandat 3667.356 kb on + strandat 3667.356 kb on + strandat 3667.359 kb on + strandat 3667.387 kb on + strandat 3667.403 kb on - strandat 3667.516 kb on - strandat 3667.516 kb on - strandat 3667.518 kb on - strandat 3667.520 kb on + strandat 3667.520 kb on + strandat 3667.521 kb on - strandat 3667.563 kb on + strand, within CA264_15710at 3667.564 kb on - strand, within CA264_15710at 3667.566 kb on + strand, within CA264_15710at 3667.662 kb on + strand, within CA264_15710at 3667.662 kb on + strand, within CA264_15710at 3667.666 kb on + strand, within CA264_15710at 3667.667 kb on - strand, within CA264_15710at 3667.667 kb on - strand, within CA264_15710at 3667.733 kb on + strand, within CA264_15710at 3667.734 kb on - strand, within CA264_15710at 3667.734 kb on - strand, within CA264_15710at 3667.737 kb on - strand, within CA264_15710at 3667.761 kb on - strand, within CA264_15710at 3667.793 kb on - strand, within CA264_15710at 3667.999 kb on + strand, within CA264_15710at 3668.073 kb on - strand, within CA264_15710at 3668.088 kb on - strand, within CA264_15710at 3668.088 kb on - strand, within CA264_15710at 3668.100 kb on - strand, within CA264_15710at 3668.183 kb on - strandat 3668.185 kb on - strandat 3668.271 kb on - strandat 3668.359 kb on - strand, within CA264_15715at 3668.437 kb on + strand, within CA264_15715at 3668.437 kb on + strand, within CA264_15715at 3668.437 kb on + strand, within CA264_15715at 3668.438 kb on - strand, within CA264_15715at 3668.441 kb on + strand, within CA264_15715at 3668.441 kb on + strand, within CA264_15715at 3668.442 kb on - strand, within CA264_15715at 3668.507 kb on + strand, within CA264_15715at 3668.550 kb on + strand, within CA264_15715at 3668.551 kb on - strand, within CA264_15715at 3668.551 kb on - strand, within CA264_15715at 3668.552 kb on + strand, within CA264_15715at 3668.661 kb on - strand, within CA264_15715at 3668.661 kb on - strand, within CA264_15715at 3668.839 kb on + strand, within CA264_15715at 3668.842 kb on - strand, within CA264_15715at 3668.945 kb on + strand, within CA264_15715at 3668.945 kb on + strand, within CA264_15715at 3669.024 kb on + strand, within CA264_15715at 3669.024 kb on + strand, within CA264_15715at 3669.045 kb on - strand, within CA264_15715at 3669.138 kb on + strand, within CA264_15715at 3669.179 kb on + strand, within CA264_15715at 3669.265 kb on + strand, within CA264_15715at 3669.266 kb on - strand, within CA264_15715at 3669.267 kb on + strand, within CA264_15715at 3669.298 kb on - strandat 3669.298 kb on - strandat 3669.395 kb on - strandat 3669.507 kb on + strandat 3669.539 kb on - strandat 3669.539 kb on - strandat 3669.588 kb on + strandat 3669.610 kb on + strandat 3669.611 kb on - strandat 3669.617 kb on + strandat 3669.618 kb on - strandat 3669.811 kb on + strand, within CA264_15720at 3669.903 kb on - strand, within CA264_15720at 3670.031 kb on - strand, within CA264_15720at 3670.031 kb on - strand, within CA264_15720at 3670.067 kb on - strandat 3670.131 kb on + strandat 3670.164 kb on + strandat 3670.164 kb on + strandat 3670.165 kb on - strandat 3670.216 kb on + strandat 3670.216 kb on + strandat 3670.218 kb on + strandat 3670.218 kb on + strandat 3670.218 kb on + strandat 3670.219 kb on - strandat 3670.224 kb on - strandat 3670.224 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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3,667,325 + +0.5
3,667,329 + +1.0
3,667,329 + +0.3
3,667,330 - +2.0
3,667,356 + +0.4
3,667,356 + -0.3
3,667,356 + +1.1
3,667,356 + +0.7
3,667,359 + -0.3
3,667,387 + -0.8
3,667,403 - +0.0
3,667,516 - -0.0
3,667,516 - -0.5
3,667,518 - -0.0
3,667,520 + +0.1
3,667,520 + -0.5
3,667,521 - -1.2
3,667,563 + CA264_15710 0.13 -0.4
3,667,564 - CA264_15710 0.13 +0.4
3,667,566 + CA264_15710 0.13 +0.1
3,667,662 + CA264_15710 0.26 +2.3
3,667,662 + CA264_15710 0.26 -0.0
3,667,666 + CA264_15710 0.27 +0.3
3,667,667 - CA264_15710 0.27 +0.5
3,667,667 - CA264_15710 0.27 -0.2
3,667,733 + CA264_15710 0.36 -0.7
3,667,734 - CA264_15710 0.36 +0.0
3,667,734 - CA264_15710 0.36 -0.6
3,667,737 - CA264_15710 0.36 +0.6
3,667,761 - CA264_15710 0.39 +2.5
3,667,793 - CA264_15710 0.44 -0.0
3,667,999 + CA264_15710 0.72 +1.0
3,668,073 - CA264_15710 0.82 +0.4
3,668,088 - CA264_15710 0.84 -0.5
3,668,088 - CA264_15710 0.84 -0.9
3,668,100 - CA264_15710 0.86 -0.1
3,668,183 - -0.6
3,668,185 - -0.0
3,668,271 - -0.4
3,668,359 - CA264_15715 0.13 -0.2
3,668,437 + CA264_15715 0.19 -0.1
3,668,437 + CA264_15715 0.19 +0.7
3,668,437 + CA264_15715 0.19 -1.0
3,668,438 - CA264_15715 0.19 -0.5
3,668,441 + CA264_15715 0.20 -0.8
3,668,441 + CA264_15715 0.20 +0.1
3,668,442 - CA264_15715 0.20 +1.0
3,668,507 + CA264_15715 0.25 -0.7
3,668,550 + CA264_15715 0.29 -0.4
3,668,551 - CA264_15715 0.29 -1.0
3,668,551 - CA264_15715 0.29 -0.8
3,668,552 + CA264_15715 0.29 +0.1
3,668,661 - CA264_15715 0.38 -0.0
3,668,661 - CA264_15715 0.38 -0.1
3,668,839 + CA264_15715 0.53 -0.6
3,668,842 - CA264_15715 0.53 -0.6
3,668,945 + CA264_15715 0.62 -0.6
3,668,945 + CA264_15715 0.62 -0.6
3,669,024 + CA264_15715 0.69 -0.0
3,669,024 + CA264_15715 0.69 -0.6
3,669,045 - CA264_15715 0.70 -0.1
3,669,138 + CA264_15715 0.78 +0.5
3,669,179 + CA264_15715 0.82 -0.8
3,669,265 + CA264_15715 0.89 -1.4
3,669,266 - CA264_15715 0.89 -0.1
3,669,267 + CA264_15715 0.89 -0.6
3,669,298 - -0.0
3,669,298 - -0.5
3,669,395 - +0.2
3,669,507 + +0.4
3,669,539 - -0.2
3,669,539 - -0.6
3,669,588 + -1.2
3,669,610 + +0.0
3,669,611 - +0.3
3,669,617 + -0.2
3,669,618 - -0.3
3,669,811 + CA264_15720 0.43 -0.2
3,669,903 - CA264_15720 0.62 -0.2
3,670,031 - CA264_15720 0.87 -0.6
3,670,031 - CA264_15720 0.87 -0.0
3,670,067 - -0.2
3,670,131 + -0.0
3,670,164 + +0.1
3,670,164 + -1.4
3,670,165 - +0.4
3,670,216 + -0.3
3,670,216 + -0.4
3,670,218 + -0.4
3,670,218 + +0.3
3,670,218 + -0.3
3,670,219 - -0.3
3,670,224 - -1.2
3,670,224 - +1.0

Or see this region's nucleotide sequence