Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15705 and CA264_15710 are separated by 153 nucleotides CA264_15710 and CA264_15715 are separated by 3 nucleotides CA264_15715 and CA264_15720 are separated by 201 nucleotides CA264_15720 and CA264_15725 are separated by 45 nucleotides
CA264_15705: CA264_15705 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 3,666,775 to 3,667,317
_15705
CA264_15710: CA264_15710 - hypothetical protein, at 3,667,471 to 3,668,205
_15710
CA264_15715: CA264_15715 - GTPase HflX, at 3,668,209 to 3,669,396
_15715
CA264_15720: CA264_15720 - phosphohistidine phosphatase, at 3,669,598 to 3,670,092
_15720
CA264_15725: CA264_15725 - polyphosphate kinase 1, at 3,670,138 to 3,672,252
_15725
Position (kb)
3668
3669
3670 Strain fitness (log2 ratio)
-1
0
1
2 at 3667.325 kb on + strand at 3667.329 kb on + strand at 3667.329 kb on + strand at 3667.330 kb on - strand at 3667.356 kb on + strand at 3667.356 kb on + strand at 3667.356 kb on + strand at 3667.356 kb on + strand at 3667.359 kb on + strand at 3667.387 kb on + strand at 3667.403 kb on - strand at 3667.516 kb on - strand at 3667.516 kb on - strand at 3667.518 kb on - strand at 3667.520 kb on + strand at 3667.520 kb on + strand at 3667.521 kb on - strand at 3667.563 kb on + strand, within CA264_15710 at 3667.564 kb on - strand, within CA264_15710 at 3667.566 kb on + strand, within CA264_15710 at 3667.662 kb on + strand, within CA264_15710 at 3667.662 kb on + strand, within CA264_15710 at 3667.666 kb on + strand, within CA264_15710 at 3667.667 kb on - strand, within CA264_15710 at 3667.667 kb on - strand, within CA264_15710 at 3667.733 kb on + strand, within CA264_15710 at 3667.734 kb on - strand, within CA264_15710 at 3667.734 kb on - strand, within CA264_15710 at 3667.737 kb on - strand, within CA264_15710 at 3667.761 kb on - strand, within CA264_15710 at 3667.793 kb on - strand, within CA264_15710 at 3667.999 kb on + strand, within CA264_15710 at 3668.073 kb on - strand, within CA264_15710 at 3668.088 kb on - strand, within CA264_15710 at 3668.088 kb on - strand, within CA264_15710 at 3668.100 kb on - strand, within CA264_15710 at 3668.183 kb on - strand at 3668.185 kb on - strand at 3668.271 kb on - strand at 3668.359 kb on - strand, within CA264_15715 at 3668.437 kb on + strand, within CA264_15715 at 3668.437 kb on + strand, within CA264_15715 at 3668.437 kb on + strand, within CA264_15715 at 3668.438 kb on - strand, within CA264_15715 at 3668.441 kb on + strand, within CA264_15715 at 3668.441 kb on + strand, within CA264_15715 at 3668.442 kb on - strand, within CA264_15715 at 3668.507 kb on + strand, within CA264_15715 at 3668.550 kb on + strand, within CA264_15715 at 3668.551 kb on - strand, within CA264_15715 at 3668.551 kb on - strand, within CA264_15715 at 3668.552 kb on + strand, within CA264_15715 at 3668.661 kb on - strand, within CA264_15715 at 3668.661 kb on - strand, within CA264_15715 at 3668.839 kb on + strand, within CA264_15715 at 3668.842 kb on - strand, within CA264_15715 at 3668.945 kb on + strand, within CA264_15715 at 3668.945 kb on + strand, within CA264_15715 at 3669.024 kb on + strand, within CA264_15715 at 3669.024 kb on + strand, within CA264_15715 at 3669.045 kb on - strand, within CA264_15715 at 3669.138 kb on + strand, within CA264_15715 at 3669.179 kb on + strand, within CA264_15715 at 3669.265 kb on + strand, within CA264_15715 at 3669.266 kb on - strand, within CA264_15715 at 3669.267 kb on + strand, within CA264_15715 at 3669.298 kb on - strand at 3669.298 kb on - strand at 3669.395 kb on - strand at 3669.507 kb on + strand at 3669.539 kb on - strand at 3669.539 kb on - strand at 3669.588 kb on + strand at 3669.610 kb on + strand at 3669.611 kb on - strand at 3669.617 kb on + strand at 3669.618 kb on - strand at 3669.811 kb on + strand, within CA264_15720 at 3669.903 kb on - strand, within CA264_15720 at 3670.031 kb on - strand, within CA264_15720 at 3670.031 kb on - strand, within CA264_15720 at 3670.067 kb on - strand at 3670.131 kb on + strand at 3670.164 kb on + strand at 3670.164 kb on + strand at 3670.165 kb on - strand at 3670.216 kb on + strand at 3670.216 kb on + strand at 3670.218 kb on + strand at 3670.218 kb on + strand at 3670.218 kb on + strand at 3670.219 kb on - strand at 3670.224 kb on - strand at 3670.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 3,667,325 + +0.5 3,667,329 + +1.0 3,667,329 + +0.3 3,667,330 - +2.0 3,667,356 + +0.4 3,667,356 + -0.3 3,667,356 + +1.1 3,667,356 + +0.7 3,667,359 + -0.3 3,667,387 + -0.8 3,667,403 - +0.0 3,667,516 - -0.0 3,667,516 - -0.5 3,667,518 - -0.0 3,667,520 + +0.1 3,667,520 + -0.5 3,667,521 - -1.2 3,667,563 + CA264_15710 0.13 -0.4 3,667,564 - CA264_15710 0.13 +0.4 3,667,566 + CA264_15710 0.13 +0.1 3,667,662 + CA264_15710 0.26 +2.3 3,667,662 + CA264_15710 0.26 -0.0 3,667,666 + CA264_15710 0.27 +0.3 3,667,667 - CA264_15710 0.27 +0.5 3,667,667 - CA264_15710 0.27 -0.2 3,667,733 + CA264_15710 0.36 -0.7 3,667,734 - CA264_15710 0.36 +0.0 3,667,734 - CA264_15710 0.36 -0.6 3,667,737 - CA264_15710 0.36 +0.6 3,667,761 - CA264_15710 0.39 +2.5 3,667,793 - CA264_15710 0.44 -0.0 3,667,999 + CA264_15710 0.72 +1.0 3,668,073 - CA264_15710 0.82 +0.4 3,668,088 - CA264_15710 0.84 -0.5 3,668,088 - CA264_15710 0.84 -0.9 3,668,100 - CA264_15710 0.86 -0.1 3,668,183 - -0.6 3,668,185 - -0.0 3,668,271 - -0.4 3,668,359 - CA264_15715 0.13 -0.2 3,668,437 + CA264_15715 0.19 -0.1 3,668,437 + CA264_15715 0.19 +0.7 3,668,437 + CA264_15715 0.19 -1.0 3,668,438 - CA264_15715 0.19 -0.5 3,668,441 + CA264_15715 0.20 -0.8 3,668,441 + CA264_15715 0.20 +0.1 3,668,442 - CA264_15715 0.20 +1.0 3,668,507 + CA264_15715 0.25 -0.7 3,668,550 + CA264_15715 0.29 -0.4 3,668,551 - CA264_15715 0.29 -1.0 3,668,551 - CA264_15715 0.29 -0.8 3,668,552 + CA264_15715 0.29 +0.1 3,668,661 - CA264_15715 0.38 -0.0 3,668,661 - CA264_15715 0.38 -0.1 3,668,839 + CA264_15715 0.53 -0.6 3,668,842 - CA264_15715 0.53 -0.6 3,668,945 + CA264_15715 0.62 -0.6 3,668,945 + CA264_15715 0.62 -0.6 3,669,024 + CA264_15715 0.69 -0.0 3,669,024 + CA264_15715 0.69 -0.6 3,669,045 - CA264_15715 0.70 -0.1 3,669,138 + CA264_15715 0.78 +0.5 3,669,179 + CA264_15715 0.82 -0.8 3,669,265 + CA264_15715 0.89 -1.4 3,669,266 - CA264_15715 0.89 -0.1 3,669,267 + CA264_15715 0.89 -0.6 3,669,298 - -0.0 3,669,298 - -0.5 3,669,395 - +0.2 3,669,507 + +0.4 3,669,539 - -0.2 3,669,539 - -0.6 3,669,588 + -1.2 3,669,610 + +0.0 3,669,611 - +0.3 3,669,617 + -0.2 3,669,618 - -0.3 3,669,811 + CA264_15720 0.43 -0.2 3,669,903 - CA264_15720 0.62 -0.2 3,670,031 - CA264_15720 0.87 -0.6 3,670,031 - CA264_15720 0.87 -0.0 3,670,067 - -0.2 3,670,131 + -0.0 3,670,164 + +0.1 3,670,164 + -1.4 3,670,165 - +0.4 3,670,216 + -0.3 3,670,216 + -0.4 3,670,218 + -0.4 3,670,218 + +0.3 3,670,218 + -0.3 3,670,219 - -0.3 3,670,224 - -1.2 3,670,224 - +1.0
Or see this region's nucleotide sequence