Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13755

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13750 and CA264_13755 are separated by 401 nucleotidesCA264_13755 and CA264_13760 are separated by 301 nucleotides CA264_13750: CA264_13750 - response regulator, at 3,212,963 to 3,213,406 _13750 CA264_13755: CA264_13755 - cystathionine beta-synthase, at 3,213,808 to 3,214,791 _13755 CA264_13760: CA264_13760 - succinate--CoA ligase subunit alpha, at 3,215,093 to 3,215,983 _13760 Position (kb) 3213 3214 3215Strain fitness (log2 ratio) -1 0 1 2 3at 3212.901 kb on - strandat 3212.955 kb on + strandat 3212.958 kb on - strandat 3213.046 kb on + strand, within CA264_13750at 3213.047 kb on - strand, within CA264_13750at 3213.060 kb on + strand, within CA264_13750at 3213.060 kb on + strand, within CA264_13750at 3213.103 kb on + strand, within CA264_13750at 3213.104 kb on - strand, within CA264_13750at 3213.104 kb on - strand, within CA264_13750at 3213.122 kb on - strand, within CA264_13750at 3213.122 kb on - strand, within CA264_13750at 3213.153 kb on + strand, within CA264_13750at 3213.221 kb on - strand, within CA264_13750at 3213.233 kb on - strand, within CA264_13750at 3213.260 kb on - strand, within CA264_13750at 3213.265 kb on + strand, within CA264_13750at 3213.267 kb on + strand, within CA264_13750at 3213.268 kb on - strand, within CA264_13750at 3213.269 kb on + strand, within CA264_13750at 3213.269 kb on + strand, within CA264_13750at 3213.269 kb on + strand, within CA264_13750at 3213.270 kb on - strand, within CA264_13750at 3213.270 kb on - strand, within CA264_13750at 3213.289 kb on + strand, within CA264_13750at 3213.364 kb on + strandat 3213.364 kb on + strandat 3213.365 kb on - strandat 3213.407 kb on - strandat 3213.424 kb on + strandat 3213.425 kb on - strandat 3213.446 kb on - strandat 3213.598 kb on - strandat 3213.616 kb on - strandat 3213.646 kb on - strandat 3213.695 kb on + strandat 3213.695 kb on + strandat 3213.696 kb on - strandat 3213.697 kb on + strandat 3213.698 kb on - strandat 3213.705 kb on + strandat 3213.705 kb on + strandat 3213.706 kb on - strandat 3213.706 kb on - strandat 3213.732 kb on - strandat 3213.741 kb on + strandat 3213.741 kb on + strandat 3213.797 kb on + strandat 3214.169 kb on + strand, within CA264_13755at 3214.410 kb on - strand, within CA264_13755at 3214.726 kb on + strandat 3214.755 kb on + strandat 3214.804 kb on - strandat 3214.822 kb on + strandat 3214.831 kb on + strandat 3214.995 kb on - strandat 3214.996 kb on + strandat 3214.997 kb on - strandat 3215.000 kb on - strandat 3215.009 kb on + strandat 3215.049 kb on - strandat 3215.054 kb on - strandat 3215.054 kb on - strandat 3215.054 kb on - strandat 3215.070 kb on + strandat 3215.070 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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3,212,901 - -0.1
3,212,955 + -0.8
3,212,958 - -0.1
3,213,046 + CA264_13750 0.19 -1.1
3,213,047 - CA264_13750 0.19 +0.1
3,213,060 + CA264_13750 0.22 -0.6
3,213,060 + CA264_13750 0.22 +0.2
3,213,103 + CA264_13750 0.32 -0.1
3,213,104 - CA264_13750 0.32 +0.1
3,213,104 - CA264_13750 0.32 +0.2
3,213,122 - CA264_13750 0.36 +0.0
3,213,122 - CA264_13750 0.36 -0.7
3,213,153 + CA264_13750 0.43 +0.9
3,213,221 - CA264_13750 0.58 -0.1
3,213,233 - CA264_13750 0.61 +0.2
3,213,260 - CA264_13750 0.67 -0.4
3,213,265 + CA264_13750 0.68 +1.5
3,213,267 + CA264_13750 0.68 -0.5
3,213,268 - CA264_13750 0.69 -0.1
3,213,269 + CA264_13750 0.69 +0.2
3,213,269 + CA264_13750 0.69 +0.4
3,213,269 + CA264_13750 0.69 -0.6
3,213,270 - CA264_13750 0.69 -0.4
3,213,270 - CA264_13750 0.69 +1.2
3,213,289 + CA264_13750 0.73 -0.2
3,213,364 + +1.0
3,213,364 + -0.2
3,213,365 - -0.2
3,213,407 - +2.9
3,213,424 + -0.2
3,213,425 - -0.3
3,213,446 - -0.7
3,213,598 - -1.5
3,213,616 - -0.7
3,213,646 - +2.1
3,213,695 + -0.8
3,213,695 + -0.2
3,213,696 - +0.3
3,213,697 + -1.5
3,213,698 - +1.3
3,213,705 + -0.6
3,213,705 + -1.1
3,213,706 - +0.0
3,213,706 - +1.4
3,213,732 - -0.2
3,213,741 + -0.0
3,213,741 + -0.1
3,213,797 + -0.3
3,214,169 + CA264_13755 0.37 +0.1
3,214,410 - CA264_13755 0.61 -0.5
3,214,726 + -0.1
3,214,755 + -0.1
3,214,804 - +0.0
3,214,822 + +0.7
3,214,831 + +1.3
3,214,995 - -0.1
3,214,996 + +0.3
3,214,997 - -1.5
3,215,000 - +0.4
3,215,009 + +0.9
3,215,049 - -0.1
3,215,054 - +0.7
3,215,054 - +0.6
3,215,054 - -0.7
3,215,070 + +1.5
3,215,070 + +1.9

Or see this region's nucleotide sequence