Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11045

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11040 and CA264_11045 are separated by 168 nucleotidesCA264_11045 and CA264_11050 are separated by 96 nucleotidesCA264_11050 and CA264_11055 are separated by 116 nucleotides CA264_11040: CA264_11040 - tRNA nucleotidyltransferase, at 2,549,506 to 2,550,939 _11040 CA264_11045: CA264_11045 - threonylcarbamoyl-AMP synthase, at 2,551,108 to 2,551,680 _11045 CA264_11050: CA264_11050 - methylmalonyl-CoA epimerase, at 2,551,777 to 2,552,178 _11050 CA264_11055: CA264_11055 - cysteine desulfurase, at 2,552,295 to 2,553,509 _11055 Position (kb) 2551 2552Strain fitness (log2 ratio) -2 -1 0 1at 2551.040 kb on + strandat 2551.040 kb on + strandat 2551.078 kb on + strandat 2551.079 kb on - strandat 2551.079 kb on - strandat 2551.109 kb on + strandat 2551.110 kb on - strandat 2551.669 kb on + strandat 2551.783 kb on + strandat 2551.924 kb on + strand, within CA264_11050at 2551.924 kb on + strand, within CA264_11050at 2551.924 kb on + strand, within CA264_11050at 2551.947 kb on + strand, within CA264_11050at 2551.947 kb on + strand, within CA264_11050at 2551.948 kb on - strand, within CA264_11050at 2552.038 kb on + strand, within CA264_11050at 2552.090 kb on + strand, within CA264_11050at 2552.090 kb on + strand, within CA264_11050at 2552.161 kb on - strandat 2552.167 kb on + strandat 2552.168 kb on - strandat 2552.190 kb on - strandat 2552.202 kb on + strandat 2552.239 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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2,551,040 + -0.1
2,551,040 + -0.7
2,551,078 + +0.1
2,551,079 - -0.3
2,551,079 - -0.1
2,551,109 + +0.2
2,551,110 - -0.4
2,551,669 + +0.5
2,551,783 + -0.1
2,551,924 + CA264_11050 0.37 -0.6
2,551,924 + CA264_11050 0.37 +0.2
2,551,924 + CA264_11050 0.37 -0.4
2,551,947 + CA264_11050 0.42 -0.5
2,551,947 + CA264_11050 0.42 -0.9
2,551,948 - CA264_11050 0.43 -0.4
2,552,038 + CA264_11050 0.65 -0.8
2,552,090 + CA264_11050 0.78 -1.4
2,552,090 + CA264_11050 0.78 -1.2
2,552,161 - -1.3
2,552,167 + -0.8
2,552,168 - -0.0
2,552,190 - -0.3
2,552,202 + -1.9
2,552,239 + -1.5

Or see this region's nucleotide sequence