Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09925 and CA264_09930 are separated by 53 nucleotides CA264_09930 and CA264_09935 are separated by 37 nucleotides CA264_09935 and CA264_09940 are separated by 54 nucleotides
CA264_09925: CA264_09925 - hypothetical protein, at 2,313,157 to 2,313,462
_09925
CA264_09930: CA264_09930 - hypothetical protein, at 2,313,516 to 2,314,304
_09930
CA264_09935: CA264_09935 - conjugative transposon protein TraN, at 2,314,342 to 2,315,187
_09935
CA264_09940: CA264_09940 - conjugative transposon protein TraM, at 2,315,242 to 2,316,486
_09940
Position (kb)
2313
2314
2315 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2312.518 kb on - strand at 2312.551 kb on + strand at 2312.625 kb on - strand at 2312.702 kb on + strand at 2312.752 kb on + strand at 2312.753 kb on - strand at 2312.860 kb on - strand at 2312.880 kb on + strand at 2312.880 kb on + strand at 2312.911 kb on - strand at 2312.911 kb on - strand at 2312.953 kb on + strand at 2312.958 kb on - strand at 2313.077 kb on - strand at 2313.077 kb on - strand at 2313.083 kb on + strand at 2313.084 kb on - strand at 2313.084 kb on - strand at 2313.216 kb on - strand, within CA264_09925 at 2313.227 kb on + strand, within CA264_09925 at 2313.228 kb on - strand, within CA264_09925 at 2313.228 kb on - strand, within CA264_09925 at 2313.272 kb on + strand, within CA264_09925 at 2313.272 kb on + strand, within CA264_09925 at 2313.272 kb on + strand, within CA264_09925 at 2313.419 kb on - strand, within CA264_09925 at 2313.419 kb on - strand, within CA264_09925 at 2313.419 kb on - strand, within CA264_09925 at 2313.481 kb on - strand at 2313.692 kb on + strand, within CA264_09930 at 2313.692 kb on + strand, within CA264_09930 at 2313.692 kb on + strand, within CA264_09930 at 2313.694 kb on + strand, within CA264_09930 at 2313.694 kb on + strand, within CA264_09930 at 2313.741 kb on + strand, within CA264_09930 at 2313.741 kb on + strand, within CA264_09930 at 2313.865 kb on + strand, within CA264_09930 at 2313.865 kb on + strand, within CA264_09930 at 2313.866 kb on - strand, within CA264_09930 at 2313.893 kb on - strand, within CA264_09930 at 2313.943 kb on + strand, within CA264_09930 at 2313.944 kb on - strand, within CA264_09930 at 2314.004 kb on - strand, within CA264_09930 at 2314.022 kb on + strand, within CA264_09930 at 2314.023 kb on - strand, within CA264_09930 at 2314.023 kb on - strand, within CA264_09930 at 2314.023 kb on - strand, within CA264_09930 at 2314.042 kb on + strand, within CA264_09930 at 2314.166 kb on + strand, within CA264_09930 at 2314.172 kb on - strand, within CA264_09930 at 2314.172 kb on - strand, within CA264_09930 at 2314.172 kb on - strand, within CA264_09930 at 2314.261 kb on + strand at 2314.261 kb on + strand at 2314.283 kb on - strand at 2314.330 kb on + strand at 2314.331 kb on - strand at 2314.331 kb on - strand at 2314.348 kb on + strand at 2314.349 kb on - strand at 2314.396 kb on - strand at 2314.471 kb on - strand, within CA264_09935 at 2314.501 kb on - strand, within CA264_09935 at 2314.532 kb on + strand, within CA264_09935 at 2314.532 kb on + strand, within CA264_09935 at 2314.595 kb on + strand, within CA264_09935 at 2314.595 kb on + strand, within CA264_09935 at 2314.595 kb on + strand, within CA264_09935 at 2314.596 kb on - strand, within CA264_09935 at 2314.617 kb on + strand, within CA264_09935 at 2315.017 kb on + strand, within CA264_09935 at 2315.145 kb on + strand at 2315.212 kb on + strand at 2315.213 kb on - strand at 2315.213 kb on - strand at 2315.214 kb on + strand at 2315.215 kb on - strand at 2315.215 kb on - strand at 2315.244 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 2,312,518 - +1.2 2,312,551 + -0.1 2,312,625 - -1.4 2,312,702 + -0.1 2,312,752 + -0.0 2,312,753 - -0.5 2,312,860 - -0.6 2,312,880 + -0.4 2,312,880 + -0.4 2,312,911 - -0.7 2,312,911 - +0.5 2,312,953 + +0.1 2,312,958 - +1.1 2,313,077 - -1.1 2,313,077 - -0.6 2,313,083 + -1.8 2,313,084 - +2.0 2,313,084 - -0.5 2,313,216 - CA264_09925 0.19 -0.2 2,313,227 + CA264_09925 0.23 -0.6 2,313,228 - CA264_09925 0.23 +0.2 2,313,228 - CA264_09925 0.23 -1.1 2,313,272 + CA264_09925 0.38 -1.3 2,313,272 + CA264_09925 0.38 -0.2 2,313,272 + CA264_09925 0.38 -0.7 2,313,419 - CA264_09925 0.86 -0.7 2,313,419 - CA264_09925 0.86 -0.6 2,313,419 - CA264_09925 0.86 -0.0 2,313,481 - -0.4 2,313,692 + CA264_09930 0.22 +0.6 2,313,692 + CA264_09930 0.22 +0.6 2,313,692 + CA264_09930 0.22 +0.6 2,313,694 + CA264_09930 0.23 +0.6 2,313,694 + CA264_09930 0.23 -1.5 2,313,741 + CA264_09930 0.29 -0.0 2,313,741 + CA264_09930 0.29 -0.8 2,313,865 + CA264_09930 0.44 -0.6 2,313,865 + CA264_09930 0.44 +0.2 2,313,866 - CA264_09930 0.44 -1.5 2,313,893 - CA264_09930 0.48 -1.0 2,313,943 + CA264_09930 0.54 -0.1 2,313,944 - CA264_09930 0.54 -0.4 2,314,004 - CA264_09930 0.62 +0.5 2,314,022 + CA264_09930 0.64 -0.4 2,314,023 - CA264_09930 0.64 +0.3 2,314,023 - CA264_09930 0.64 -0.0 2,314,023 - CA264_09930 0.64 -0.0 2,314,042 + CA264_09930 0.67 -0.4 2,314,166 + CA264_09930 0.82 +3.6 2,314,172 - CA264_09930 0.83 -1.0 2,314,172 - CA264_09930 0.83 -0.7 2,314,172 - CA264_09930 0.83 -0.1 2,314,261 + -1.1 2,314,261 + +1.2 2,314,283 - +0.4 2,314,330 + -1.2 2,314,331 - -0.7 2,314,331 - -1.2 2,314,348 + -0.4 2,314,349 - -0.4 2,314,396 - -0.5 2,314,471 - CA264_09935 0.15 +1.2 2,314,501 - CA264_09935 0.19 +0.6 2,314,532 + CA264_09935 0.22 +0.6 2,314,532 + CA264_09935 0.22 -1.4 2,314,595 + CA264_09935 0.30 -0.4 2,314,595 + CA264_09935 0.30 -0.0 2,314,595 + CA264_09935 0.30 +0.6 2,314,596 - CA264_09935 0.30 -0.6 2,314,617 + CA264_09935 0.33 -0.4 2,315,017 + CA264_09935 0.80 -0.4 2,315,145 + -0.2 2,315,212 + +0.1 2,315,213 - -0.4 2,315,213 - +0.0 2,315,214 + +0.6 2,315,215 - +0.6 2,315,215 - +1.6 2,315,244 - -1.2
Or see this region's nucleotide sequence