Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07805

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07795 and CA264_07800 are separated by 173 nucleotidesCA264_07800 and CA264_07805 are separated by 3 nucleotidesCA264_07805 and CA264_07810 are separated by 231 nucleotidesCA264_07810 and CA264_07815 are separated by 159 nucleotides CA264_07795: CA264_07795 - ATP-dependent DNA helicase, at 1,804,607 to 1,806,844 _07795 CA264_07800: CA264_07800 - hypothetical protein, at 1,807,018 to 1,807,677 _07800 CA264_07805: CA264_07805 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,807,681 to 1,808,985 _07805 CA264_07810: CA264_07810 - hypothetical protein, at 1,809,217 to 1,809,714 _07810 CA264_07815: CA264_07815 - hypothetical protein, at 1,809,874 to 1,810,335 _07815 Position (kb) 1807 1808 1809Strain fitness (log2 ratio) -2 -1 0 1at 1806.834 kb on + strandat 1806.843 kb on - strandat 1806.854 kb on - strandat 1806.867 kb on + strandat 1806.875 kb on - strandat 1806.909 kb on + strandat 1806.910 kb on - strandat 1806.910 kb on - strandat 1806.958 kb on - strandat 1806.959 kb on + strandat 1806.960 kb on - strandat 1806.971 kb on - strandat 1807.026 kb on + strandat 1807.026 kb on + strandat 1807.026 kb on + strandat 1807.026 kb on + strandat 1807.027 kb on - strandat 1807.027 kb on - strandat 1807.038 kb on + strandat 1807.064 kb on - strandat 1807.093 kb on + strand, within CA264_07800at 1807.093 kb on + strand, within CA264_07800at 1807.093 kb on + strand, within CA264_07800at 1807.095 kb on + strand, within CA264_07800at 1807.283 kb on - strand, within CA264_07800at 1807.283 kb on - strand, within CA264_07800at 1807.336 kb on - strand, within CA264_07800at 1807.448 kb on - strand, within CA264_07800at 1807.473 kb on + strand, within CA264_07800at 1807.540 kb on + strand, within CA264_07800at 1807.540 kb on + strand, within CA264_07800at 1807.541 kb on - strand, within CA264_07800at 1808.983 kb on + strandat 1809.138 kb on - strandat 1809.138 kb on - strandat 1809.264 kb on + strandat 1809.264 kb on + strandat 1809.265 kb on - strandat 1809.270 kb on + strand, within CA264_07810at 1809.270 kb on + strand, within CA264_07810at 1809.270 kb on + strand, within CA264_07810at 1809.270 kb on + strand, within CA264_07810at 1809.270 kb on + strand, within CA264_07810at 1809.331 kb on + strand, within CA264_07810at 1809.331 kb on + strand, within CA264_07810at 1809.332 kb on - strand, within CA264_07810at 1809.461 kb on + strand, within CA264_07810at 1809.469 kb on + strand, within CA264_07810at 1809.472 kb on - strand, within CA264_07810at 1809.490 kb on + strand, within CA264_07810at 1809.490 kb on + strand, within CA264_07810at 1809.491 kb on - strand, within CA264_07810at 1809.504 kb on - strand, within CA264_07810at 1809.525 kb on + strand, within CA264_07810at 1809.534 kb on - strand, within CA264_07810at 1809.627 kb on + strand, within CA264_07810at 1809.628 kb on - strand, within CA264_07810at 1809.630 kb on + strand, within CA264_07810at 1809.630 kb on + strand, within CA264_07810at 1809.651 kb on + strand, within CA264_07810at 1809.652 kb on - strand, within CA264_07810at 1809.652 kb on - strand, within CA264_07810at 1809.735 kb on + strandat 1809.762 kb on - strandat 1809.793 kb on + strandat 1809.823 kb on - strandat 1809.828 kb on - strandat 1809.830 kb on - strandat 1809.830 kb on - strandat 1809.859 kb on - strandat 1809.859 kb on - strandat 1809.859 kb on - strandat 1809.866 kb on - strandat 1809.866 kb on - strandat 1809.867 kb on + strandat 1809.902 kb on + strandat 1809.903 kb on - strandat 1809.919 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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1,806,834 + +0.2
1,806,843 - -0.1
1,806,854 - +0.1
1,806,867 + +0.2
1,806,875 - +0.0
1,806,909 + -1.4
1,806,910 - -0.2
1,806,910 - -0.1
1,806,958 - +0.3
1,806,959 + -0.6
1,806,960 - -0.1
1,806,971 - +1.0
1,807,026 + -0.4
1,807,026 + +0.8
1,807,026 + -0.5
1,807,026 + -1.0
1,807,027 - -0.7
1,807,027 - -1.0
1,807,038 + -0.4
1,807,064 - -1.2
1,807,093 + CA264_07800 0.11 -1.0
1,807,093 + CA264_07800 0.11 -1.0
1,807,093 + CA264_07800 0.11 -1.0
1,807,095 + CA264_07800 0.12 -1.5
1,807,283 - CA264_07800 0.40 +0.6
1,807,283 - CA264_07800 0.40 -0.2
1,807,336 - CA264_07800 0.48 +0.6
1,807,448 - CA264_07800 0.65 -0.7
1,807,473 + CA264_07800 0.69 +0.0
1,807,540 + CA264_07800 0.79 -0.7
1,807,540 + CA264_07800 0.79 -2.7
1,807,541 - CA264_07800 0.79 -1.2
1,808,983 + -0.2
1,809,138 - +0.0
1,809,138 - -1.3
1,809,264 + -0.0
1,809,264 + +0.7
1,809,265 - +0.7
1,809,270 + CA264_07810 0.11 -0.2
1,809,270 + CA264_07810 0.11 +0.1
1,809,270 + CA264_07810 0.11 -0.6
1,809,270 + CA264_07810 0.11 +0.5
1,809,270 + CA264_07810 0.11 +0.3
1,809,331 + CA264_07810 0.23 -0.6
1,809,331 + CA264_07810 0.23 -1.0
1,809,332 - CA264_07810 0.23 -0.1
1,809,461 + CA264_07810 0.49 -0.5
1,809,469 + CA264_07810 0.51 +0.3
1,809,472 - CA264_07810 0.51 -0.4
1,809,490 + CA264_07810 0.55 -0.6
1,809,490 + CA264_07810 0.55 -0.1
1,809,491 - CA264_07810 0.55 -1.2
1,809,504 - CA264_07810 0.58 -1.4
1,809,525 + CA264_07810 0.62 -1.1
1,809,534 - CA264_07810 0.64 +0.5
1,809,627 + CA264_07810 0.82 -0.3
1,809,628 - CA264_07810 0.83 +0.9
1,809,630 + CA264_07810 0.83 +0.9
1,809,630 + CA264_07810 0.83 -0.4
1,809,651 + CA264_07810 0.87 -0.6
1,809,652 - CA264_07810 0.87 -0.0
1,809,652 - CA264_07810 0.87 -0.2
1,809,735 + +0.4
1,809,762 - +0.7
1,809,793 + +1.6
1,809,823 - +0.6
1,809,828 - -0.2
1,809,830 - +0.6
1,809,830 - -0.2
1,809,859 - +0.2
1,809,859 - +0.5
1,809,859 - +0.6
1,809,866 - +0.6
1,809,866 - +0.5
1,809,867 + -0.4
1,809,902 + -0.1
1,809,903 - +0.1
1,809,919 - +0.0

Or see this region's nucleotide sequence