Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07790 and CA264_07795 are separated by 309 nucleotides CA264_07795 and CA264_07800 are separated by 173 nucleotides CA264_07800 and CA264_07805 are separated by 3 nucleotides
CA264_07790: CA264_07790 - ankryin, at 1,802,651 to 1,804,297
_07790
CA264_07795: CA264_07795 - ATP-dependent DNA helicase, at 1,804,607 to 1,806,844
_07795
CA264_07800: CA264_07800 - hypothetical protein, at 1,807,018 to 1,807,677
_07800
CA264_07805: CA264_07805 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,807,681 to 1,808,985
_07805
Position (kb)
1804
1805
1806
1807 Strain fitness (log2 ratio)
-2
-1
0
1 at 1803.627 kb on + strand, within CA264_07790 at 1803.672 kb on + strand, within CA264_07790 at 1803.672 kb on + strand, within CA264_07790 at 1803.672 kb on + strand, within CA264_07790 at 1803.675 kb on + strand, within CA264_07790 at 1803.675 kb on + strand, within CA264_07790 at 1803.675 kb on + strand, within CA264_07790 at 1803.675 kb on + strand, within CA264_07790 at 1803.676 kb on - strand, within CA264_07790 at 1803.676 kb on - strand, within CA264_07790 at 1803.676 kb on - strand, within CA264_07790 at 1803.676 kb on - strand, within CA264_07790 at 1803.676 kb on - strand, within CA264_07790 at 1803.855 kb on + strand, within CA264_07790 at 1803.856 kb on - strand, within CA264_07790 at 1803.856 kb on - strand, within CA264_07790 at 1803.926 kb on + strand, within CA264_07790 at 1803.943 kb on - strand, within CA264_07790 at 1803.985 kb on - strand, within CA264_07790 at 1804.054 kb on + strand, within CA264_07790 at 1804.055 kb on - strand, within CA264_07790 at 1804.059 kb on + strand, within CA264_07790 at 1804.059 kb on + strand, within CA264_07790 at 1804.059 kb on + strand, within CA264_07790 at 1804.059 kb on + strand, within CA264_07790 at 1804.060 kb on - strand, within CA264_07790 at 1804.062 kb on + strand, within CA264_07790 at 1804.062 kb on + strand, within CA264_07790 at 1804.062 kb on + strand, within CA264_07790 at 1804.062 kb on + strand, within CA264_07790 at 1804.062 kb on + strand, within CA264_07790 at 1804.063 kb on - strand, within CA264_07790 at 1804.063 kb on - strand, within CA264_07790 at 1804.063 kb on - strand, within CA264_07790 at 1804.321 kb on + strand at 1804.323 kb on + strand at 1804.324 kb on - strand at 1804.345 kb on + strand at 1804.345 kb on + strand at 1804.428 kb on + strand at 1804.429 kb on - strand at 1804.433 kb on + strand at 1804.440 kb on + strand at 1804.442 kb on + strand at 1804.443 kb on - strand at 1804.618 kb on - strand at 1804.618 kb on - strand at 1806.834 kb on + strand at 1806.843 kb on - strand at 1806.854 kb on - strand at 1806.867 kb on + strand at 1806.875 kb on - strand at 1806.909 kb on + strand at 1806.910 kb on - strand at 1806.910 kb on - strand at 1806.958 kb on - strand at 1806.959 kb on + strand at 1806.960 kb on - strand at 1806.971 kb on - strand at 1807.026 kb on + strand at 1807.026 kb on + strand at 1807.026 kb on + strand at 1807.026 kb on + strand at 1807.027 kb on - strand at 1807.027 kb on - strand at 1807.038 kb on + strand at 1807.064 kb on - strand at 1807.093 kb on + strand, within CA264_07800 at 1807.093 kb on + strand, within CA264_07800 at 1807.093 kb on + strand, within CA264_07800 at 1807.095 kb on + strand, within CA264_07800 at 1807.283 kb on - strand, within CA264_07800 at 1807.283 kb on - strand, within CA264_07800 at 1807.336 kb on - strand, within CA264_07800 at 1807.448 kb on - strand, within CA264_07800 at 1807.473 kb on + strand, within CA264_07800 at 1807.540 kb on + strand, within CA264_07800 at 1807.540 kb on + strand, within CA264_07800 at 1807.541 kb on - strand, within CA264_07800
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 1,803,627 + CA264_07790 0.59 +1.6 1,803,672 + CA264_07790 0.62 -0.3 1,803,672 + CA264_07790 0.62 -0.3 1,803,672 + CA264_07790 0.62 -0.2 1,803,675 + CA264_07790 0.62 +0.2 1,803,675 + CA264_07790 0.62 +1.0 1,803,675 + CA264_07790 0.62 -0.2 1,803,675 + CA264_07790 0.62 -0.8 1,803,676 - CA264_07790 0.62 -0.5 1,803,676 - CA264_07790 0.62 -0.3 1,803,676 - CA264_07790 0.62 -0.6 1,803,676 - CA264_07790 0.62 -0.2 1,803,676 - CA264_07790 0.62 +0.9 1,803,855 + CA264_07790 0.73 +1.3 1,803,856 - CA264_07790 0.73 +0.4 1,803,856 - CA264_07790 0.73 -0.2 1,803,926 + CA264_07790 0.77 +0.8 1,803,943 - CA264_07790 0.78 +1.4 1,803,985 - CA264_07790 0.81 -0.8 1,804,054 + CA264_07790 0.85 -0.4 1,804,055 - CA264_07790 0.85 -0.6 1,804,059 + CA264_07790 0.85 -0.1 1,804,059 + CA264_07790 0.85 -1.7 1,804,059 + CA264_07790 0.85 +0.8 1,804,059 + CA264_07790 0.85 -0.8 1,804,060 - CA264_07790 0.86 -0.1 1,804,062 + CA264_07790 0.86 +0.0 1,804,062 + CA264_07790 0.86 +0.2 1,804,062 + CA264_07790 0.86 -0.1 1,804,062 + CA264_07790 0.86 -0.3 1,804,062 + CA264_07790 0.86 -1.4 1,804,063 - CA264_07790 0.86 -1.1 1,804,063 - CA264_07790 0.86 -0.5 1,804,063 - CA264_07790 0.86 -0.4 1,804,321 + +1.5 1,804,323 + +0.2 1,804,324 - +0.3 1,804,345 + -1.2 1,804,345 + +0.6 1,804,428 + -2.4 1,804,429 - -0.5 1,804,433 + -0.0 1,804,440 + -1.6 1,804,442 + -1.6 1,804,443 - +0.8 1,804,618 - +0.2 1,804,618 - +0.4 1,806,834 + +0.2 1,806,843 - -0.1 1,806,854 - +0.1 1,806,867 + +0.2 1,806,875 - +0.0 1,806,909 + -1.4 1,806,910 - -0.2 1,806,910 - -0.1 1,806,958 - +0.3 1,806,959 + -0.6 1,806,960 - -0.1 1,806,971 - +1.0 1,807,026 + -0.4 1,807,026 + +0.8 1,807,026 + -0.5 1,807,026 + -1.0 1,807,027 - -0.7 1,807,027 - -1.0 1,807,038 + -0.4 1,807,064 - -1.2 1,807,093 + CA264_07800 0.11 -1.0 1,807,093 + CA264_07800 0.11 -1.0 1,807,093 + CA264_07800 0.11 -1.0 1,807,095 + CA264_07800 0.12 -1.5 1,807,283 - CA264_07800 0.40 +0.6 1,807,283 - CA264_07800 0.40 -0.2 1,807,336 - CA264_07800 0.48 +0.6 1,807,448 - CA264_07800 0.65 -0.7 1,807,473 + CA264_07800 0.69 +0.0 1,807,540 + CA264_07800 0.79 -0.7 1,807,540 + CA264_07800 0.79 -2.7 1,807,541 - CA264_07800 0.79 -1.2
Or see this region's nucleotide sequence