Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06895

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06885 and CA264_06890 overlap by 40 nucleotidesCA264_06890 and CA264_06895 are separated by 151 nucleotidesCA264_06895 and CA264_06900 overlap by 2 nucleotidesCA264_06900 and CA264_06905 are separated by 29 nucleotides CA264_06885: CA264_06885 - hypothetical protein, at 1,593,299 to 1,594,102 _06885 CA264_06890: CA264_06890 - hypothetical protein, at 1,594,063 to 1,594,797 _06890 CA264_06895: CA264_06895 - hypothetical protein, at 1,594,949 to 1,595,128 _06895 CA264_06900: CA264_06900 - hypothetical protein, at 1,595,127 to 1,595,735 _06900 CA264_06905: CA264_06905 - hypothetical protein, at 1,595,765 to 1,597,177 _06905 Position (kb) 1594 1595 1596Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1593.981 kb on + strand, within CA264_06885at 1593.981 kb on + strand, within CA264_06885at 1593.982 kb on - strand, within CA264_06885at 1593.982 kb on - strand, within CA264_06885at 1594.007 kb on + strand, within CA264_06885at 1594.007 kb on + strand, within CA264_06885at 1594.007 kb on + strand, within CA264_06885at 1594.037 kb on + strandat 1594.038 kb on - strandat 1594.039 kb on + strandat 1594.040 kb on - strandat 1594.040 kb on - strandat 1594.044 kb on + strandat 1594.084 kb on - strandat 1594.101 kb on - strandat 1594.114 kb on - strandat 1594.121 kb on - strandat 1594.151 kb on + strand, within CA264_06890at 1594.151 kb on + strand, within CA264_06890at 1594.152 kb on - strand, within CA264_06890at 1594.156 kb on - strand, within CA264_06890at 1594.238 kb on + strand, within CA264_06890at 1594.251 kb on + strand, within CA264_06890at 1594.306 kb on - strand, within CA264_06890at 1594.306 kb on - strand, within CA264_06890at 1594.323 kb on + strand, within CA264_06890at 1594.323 kb on + strand, within CA264_06890at 1594.323 kb on + strand, within CA264_06890at 1594.323 kb on + strand, within CA264_06890at 1594.323 kb on + strand, within CA264_06890at 1594.323 kb on + strand, within CA264_06890at 1594.324 kb on - strand, within CA264_06890at 1594.364 kb on + strand, within CA264_06890at 1594.365 kb on - strand, within CA264_06890at 1594.398 kb on + strand, within CA264_06890at 1594.405 kb on + strand, within CA264_06890at 1594.408 kb on - strand, within CA264_06890at 1594.478 kb on - strand, within CA264_06890at 1594.478 kb on - strand, within CA264_06890at 1594.479 kb on + strand, within CA264_06890at 1594.480 kb on - strand, within CA264_06890at 1594.493 kb on + strand, within CA264_06890at 1594.493 kb on + strand, within CA264_06890at 1594.493 kb on + strand, within CA264_06890at 1594.494 kb on - strand, within CA264_06890at 1594.494 kb on - strand, within CA264_06890at 1594.542 kb on - strand, within CA264_06890at 1594.616 kb on + strand, within CA264_06890at 1594.617 kb on - strand, within CA264_06890at 1594.617 kb on - strand, within CA264_06890at 1594.683 kb on + strand, within CA264_06890at 1594.684 kb on - strand, within CA264_06890at 1594.689 kb on + strand, within CA264_06890at 1594.689 kb on + strand, within CA264_06890at 1594.690 kb on - strand, within CA264_06890at 1594.789 kb on - strandat 1594.796 kb on - strandat 1594.885 kb on + strandat 1594.891 kb on + strandat 1594.892 kb on - strandat 1594.914 kb on - strandat 1594.914 kb on - strandat 1594.947 kb on + strandat 1594.967 kb on + strand, within CA264_06895at 1594.967 kb on + strand, within CA264_06895at 1594.968 kb on - strand, within CA264_06895at 1594.970 kb on + strand, within CA264_06895at 1594.986 kb on + strand, within CA264_06895at 1594.986 kb on + strand, within CA264_06895at 1594.987 kb on - strand, within CA264_06895at 1594.988 kb on + strand, within CA264_06895at 1594.989 kb on - strand, within CA264_06895at 1595.012 kb on + strand, within CA264_06895at 1595.098 kb on + strand, within CA264_06895at 1595.099 kb on - strand, within CA264_06895at 1595.114 kb on - strandat 1595.208 kb on - strand, within CA264_06900at 1595.263 kb on - strand, within CA264_06900at 1595.299 kb on - strand, within CA264_06900at 1595.325 kb on + strand, within CA264_06900at 1595.348 kb on + strand, within CA264_06900at 1595.348 kb on + strand, within CA264_06900at 1595.349 kb on - strand, within CA264_06900at 1595.349 kb on - strand, within CA264_06900at 1595.349 kb on - strand, within CA264_06900at 1595.349 kb on - strand, within CA264_06900at 1595.349 kb on - strand, within CA264_06900at 1595.349 kb on - strand, within CA264_06900at 1595.349 kb on - strand, within CA264_06900at 1595.352 kb on + strand, within CA264_06900at 1595.352 kb on + strand, within CA264_06900at 1595.352 kb on + strand, within CA264_06900at 1595.353 kb on - strand, within CA264_06900at 1595.353 kb on - strand, within CA264_06900at 1595.395 kb on - strand, within CA264_06900at 1595.395 kb on - strand, within CA264_06900at 1595.399 kb on - strand, within CA264_06900at 1595.406 kb on - strand, within CA264_06900at 1595.406 kb on - strand, within CA264_06900at 1595.422 kb on + strand, within CA264_06900at 1595.423 kb on - strand, within CA264_06900at 1595.427 kb on + strand, within CA264_06900at 1595.508 kb on + strand, within CA264_06900at 1595.508 kb on + strand, within CA264_06900at 1595.513 kb on + strand, within CA264_06900at 1595.513 kb on + strand, within CA264_06900at 1595.513 kb on + strand, within CA264_06900at 1595.513 kb on + strand, within CA264_06900at 1595.513 kb on + strand, within CA264_06900at 1595.514 kb on - strand, within CA264_06900at 1595.514 kb on - strand, within CA264_06900at 1595.514 kb on - strand, within CA264_06900at 1595.514 kb on - strand, within CA264_06900at 1595.514 kb on - strand, within CA264_06900at 1595.514 kb on - strand, within CA264_06900at 1595.515 kb on + strand, within CA264_06900at 1595.515 kb on + strand, within CA264_06900at 1595.515 kb on + strand, within CA264_06900at 1595.515 kb on + strand, within CA264_06900at 1595.515 kb on + strand, within CA264_06900at 1595.515 kb on + strand, within CA264_06900at 1595.515 kb on + strand, within CA264_06900at 1595.516 kb on - strand, within CA264_06900at 1595.516 kb on - strand, within CA264_06900at 1595.516 kb on - strand, within CA264_06900at 1595.516 kb on - strand, within CA264_06900at 1595.516 kb on - strand, within CA264_06900at 1595.516 kb on - strand, within CA264_06900at 1595.516 kb on - strand, within CA264_06900at 1595.516 kb on - strand, within CA264_06900at 1595.516 kb on - strand, within CA264_06900at 1595.516 kb on - strand, within CA264_06900at 1595.517 kb on + strand, within CA264_06900at 1595.517 kb on + strand, within CA264_06900at 1595.518 kb on - strand, within CA264_06900at 1595.531 kb on + strand, within CA264_06900at 1595.533 kb on + strand, within CA264_06900at 1595.596 kb on + strand, within CA264_06900at 1595.597 kb on - strand, within CA264_06900at 1595.620 kb on + strand, within CA264_06900at 1595.620 kb on + strand, within CA264_06900at 1595.621 kb on - strand, within CA264_06900at 1595.643 kb on + strand, within CA264_06900at 1595.644 kb on - strand, within CA264_06900at 1595.650 kb on + strand, within CA264_06900at 1595.651 kb on - strand, within CA264_06900at 1595.663 kb on - strand, within CA264_06900at 1595.674 kb on - strand, within CA264_06900at 1595.691 kb on + strandat 1595.705 kb on + strandat 1595.705 kb on + strandat 1595.744 kb on + strandat 1595.744 kb on + strandat 1595.763 kb on - strandat 1595.766 kb on + strandat 1595.827 kb on + strandat 1595.848 kb on - strandat 1595.849 kb on + strandat 1595.849 kb on + strandat 1596.029 kb on - strand, within CA264_06905at 1596.056 kb on + strand, within CA264_06905at 1596.059 kb on - strand, within CA264_06905at 1596.103 kb on + strand, within CA264_06905at 1596.103 kb on + strand, within CA264_06905at 1596.108 kb on - strand, within CA264_06905at 1596.114 kb on + strand, within CA264_06905at 1596.115 kb on - strand, within CA264_06905at 1596.115 kb on - strand, within CA264_06905at 1596.117 kb on + strand, within CA264_06905at 1596.117 kb on + strand, within CA264_06905

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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1,593,981 + CA264_06885 0.85 +0.6
1,593,981 + CA264_06885 0.85 -0.6
1,593,982 - CA264_06885 0.85 +0.8
1,593,982 - CA264_06885 0.85 +0.6
1,594,007 + CA264_06885 0.88 -1.8
1,594,007 + CA264_06885 0.88 -0.4
1,594,007 + CA264_06885 0.88 +0.5
1,594,037 + -0.7
1,594,038 - +0.5
1,594,039 + -0.2
1,594,040 - -1.0
1,594,040 - +1.6
1,594,044 + -0.7
1,594,084 - -0.6
1,594,101 - +0.3
1,594,114 - -1.4
1,594,121 - +0.3
1,594,151 + CA264_06890 0.12 -0.6
1,594,151 + CA264_06890 0.12 -0.1
1,594,152 - CA264_06890 0.12 +1.9
1,594,156 - CA264_06890 0.13 +1.9
1,594,238 + CA264_06890 0.24 -0.6
1,594,251 + CA264_06890 0.26 -1.7
1,594,306 - CA264_06890 0.33 -1.0
1,594,306 - CA264_06890 0.33 +0.9
1,594,323 + CA264_06890 0.35 -1.3
1,594,323 + CA264_06890 0.35 +0.2
1,594,323 + CA264_06890 0.35 -0.4
1,594,323 + CA264_06890 0.35 +0.7
1,594,323 + CA264_06890 0.35 -1.0
1,594,323 + CA264_06890 0.35 -0.5
1,594,324 - CA264_06890 0.36 -0.1
1,594,364 + CA264_06890 0.41 +0.6
1,594,365 - CA264_06890 0.41 -0.8
1,594,398 + CA264_06890 0.46 -0.3
1,594,405 + CA264_06890 0.47 -0.6
1,594,408 - CA264_06890 0.47 +0.6
1,594,478 - CA264_06890 0.56 -0.6
1,594,478 - CA264_06890 0.56 -0.1
1,594,479 + CA264_06890 0.57 -0.8
1,594,480 - CA264_06890 0.57 -0.3
1,594,493 + CA264_06890 0.59 -0.1
1,594,493 + CA264_06890 0.59 -1.2
1,594,493 + CA264_06890 0.59 +0.0
1,594,494 - CA264_06890 0.59 +0.3
1,594,494 - CA264_06890 0.59 -0.0
1,594,542 - CA264_06890 0.65 +0.1
1,594,616 + CA264_06890 0.75 -0.1
1,594,617 - CA264_06890 0.75 -0.5
1,594,617 - CA264_06890 0.75 -0.3
1,594,683 + CA264_06890 0.84 -0.6
1,594,684 - CA264_06890 0.84 -0.8
1,594,689 + CA264_06890 0.85 -0.1
1,594,689 + CA264_06890 0.85 +3.2
1,594,690 - CA264_06890 0.85 +0.9
1,594,789 - -1.2
1,594,796 - -0.9
1,594,885 + +1.6
1,594,891 + +0.3
1,594,892 - +0.5
1,594,914 - -0.5
1,594,914 - -0.5
1,594,947 + -1.0
1,594,967 + CA264_06895 0.10 +1.0
1,594,967 + CA264_06895 0.10 -0.4
1,594,968 - CA264_06895 0.11 +1.6
1,594,970 + CA264_06895 0.12 +0.2
1,594,986 + CA264_06895 0.21 -0.0
1,594,986 + CA264_06895 0.21 -0.1
1,594,987 - CA264_06895 0.21 -0.2
1,594,988 + CA264_06895 0.22 +0.9
1,594,989 - CA264_06895 0.22 +1.2
1,595,012 + CA264_06895 0.35 -0.2
1,595,098 + CA264_06895 0.83 +0.1
1,595,099 - CA264_06895 0.83 -0.3
1,595,114 - -0.7
1,595,208 - CA264_06900 0.13 -0.5
1,595,263 - CA264_06900 0.22 +1.2
1,595,299 - CA264_06900 0.28 -0.1
1,595,325 + CA264_06900 0.33 -0.2
1,595,348 + CA264_06900 0.36 -0.8
1,595,348 + CA264_06900 0.36 +0.2
1,595,349 - CA264_06900 0.36 -0.9
1,595,349 - CA264_06900 0.36 -1.8
1,595,349 - CA264_06900 0.36 -0.6
1,595,349 - CA264_06900 0.36 +2.9
1,595,349 - CA264_06900 0.36 -1.0
1,595,349 - CA264_06900 0.36 +0.8
1,595,349 - CA264_06900 0.36 +0.8
1,595,352 + CA264_06900 0.37 -0.3
1,595,352 + CA264_06900 0.37 +0.2
1,595,352 + CA264_06900 0.37 +1.9
1,595,353 - CA264_06900 0.37 -0.5
1,595,353 - CA264_06900 0.37 -0.3
1,595,395 - CA264_06900 0.44 +0.2
1,595,395 - CA264_06900 0.44 -0.6
1,595,399 - CA264_06900 0.45 +2.6
1,595,406 - CA264_06900 0.46 -0.2
1,595,406 - CA264_06900 0.46 -0.8
1,595,422 + CA264_06900 0.48 -1.4
1,595,423 - CA264_06900 0.49 +0.4
1,595,427 + CA264_06900 0.49 -0.3
1,595,508 + CA264_06900 0.63 +1.6
1,595,508 + CA264_06900 0.63 -0.4
1,595,513 + CA264_06900 0.63 -0.7
1,595,513 + CA264_06900 0.63 -0.4
1,595,513 + CA264_06900 0.63 -0.2
1,595,513 + CA264_06900 0.63 -0.4
1,595,513 + CA264_06900 0.63 +1.2
1,595,514 - CA264_06900 0.64 +0.6
1,595,514 - CA264_06900 0.64 -0.0
1,595,514 - CA264_06900 0.64 -0.6
1,595,514 - CA264_06900 0.64 -0.1
1,595,514 - CA264_06900 0.64 +0.8
1,595,514 - CA264_06900 0.64 -0.4
1,595,515 + CA264_06900 0.64 -0.1
1,595,515 + CA264_06900 0.64 +0.4
1,595,515 + CA264_06900 0.64 +0.2
1,595,515 + CA264_06900 0.64 +0.3
1,595,515 + CA264_06900 0.64 -0.1
1,595,515 + CA264_06900 0.64 +0.3
1,595,515 + CA264_06900 0.64 +1.3
1,595,516 - CA264_06900 0.64 -0.8
1,595,516 - CA264_06900 0.64 +0.7
1,595,516 - CA264_06900 0.64 -0.3
1,595,516 - CA264_06900 0.64 -0.4
1,595,516 - CA264_06900 0.64 -0.4
1,595,516 - CA264_06900 0.64 -0.4
1,595,516 - CA264_06900 0.64 +0.3
1,595,516 - CA264_06900 0.64 -0.1
1,595,516 - CA264_06900 0.64 +1.1
1,595,516 - CA264_06900 0.64 -0.4
1,595,517 + CA264_06900 0.64 -0.0
1,595,517 + CA264_06900 0.64 -0.3
1,595,518 - CA264_06900 0.64 -0.2
1,595,531 + CA264_06900 0.66 -0.1
1,595,533 + CA264_06900 0.67 +0.2
1,595,596 + CA264_06900 0.77 -1.8
1,595,597 - CA264_06900 0.77 -0.8
1,595,620 + CA264_06900 0.81 -0.1
1,595,620 + CA264_06900 0.81 -0.0
1,595,621 - CA264_06900 0.81 -1.0
1,595,643 + CA264_06900 0.85 +0.4
1,595,644 - CA264_06900 0.85 +1.3
1,595,650 + CA264_06900 0.86 -0.4
1,595,651 - CA264_06900 0.86 -0.0
1,595,663 - CA264_06900 0.88 -0.1
1,595,674 - CA264_06900 0.90 +1.4
1,595,691 + +0.3
1,595,705 + -0.2
1,595,705 + -0.8
1,595,744 + +0.2
1,595,744 + -0.8
1,595,763 - +0.2
1,595,766 + +0.3
1,595,827 + +0.3
1,595,848 - +0.2
1,595,849 + -0.9
1,595,849 + -0.3
1,596,029 - CA264_06905 0.19 +0.1
1,596,056 + CA264_06905 0.21 -0.6
1,596,059 - CA264_06905 0.21 +0.3
1,596,103 + CA264_06905 0.24 -0.6
1,596,103 + CA264_06905 0.24 -0.3
1,596,108 - CA264_06905 0.24 -0.8
1,596,114 + CA264_06905 0.25 +0.3
1,596,115 - CA264_06905 0.25 -0.3
1,596,115 - CA264_06905 0.25 -0.1
1,596,117 + CA264_06905 0.25 +1.2
1,596,117 + CA264_06905 0.25 +1.2

Or see this region's nucleotide sequence