Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04240 and CA264_04245 overlap by 31 nucleotides CA264_04245 and CA264_04250 overlap by 19 nucleotides
CA264_04240: CA264_04240 - NADH-quinone oxidoreductase subunit H, at 978,795 to 979,757
_04240
CA264_04245: CA264_04245 - NADH-quinone oxidoreductase subunit G, at 979,727 to 982,456
_04245
CA264_04250: CA264_04250 - NADH oxidoreductase (quinone) subunit F, at 982,438 to 983,739
_04250
Position (kb) 979
980
981
982
983 Strain fitness (log2 ratio) -2
-1
0
1
2 at 978.748 kb on - strand at 978.771 kb on + strand at 978.778 kb on - strand at 978.953 kb on + strand, within CA264_04240 at 978.954 kb on - strand, within CA264_04240 at 979.009 kb on + strand, within CA264_04240 at 979.009 kb on + strand, within CA264_04240 at 979.010 kb on - strand, within CA264_04240 at 979.051 kb on + strand, within CA264_04240 at 979.383 kb on + strand, within CA264_04240 at 979.383 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.386 kb on - strand, within CA264_04240 at 979.386 kb on - strand, within CA264_04240 at 979.393 kb on + strand, within CA264_04240 at 979.393 kb on + strand, within CA264_04240 at 979.394 kb on - strand, within CA264_04240 at 979.394 kb on - strand, within CA264_04240 at 979.499 kb on + strand, within CA264_04240 at 979.569 kb on - strand, within CA264_04240 at 979.637 kb on - strand, within CA264_04240 at 979.637 kb on - strand, within CA264_04240 at 979.680 kb on - strand at 979.775 kb on + strand at 979.853 kb on - strand at 979.853 kb on - strand at 979.865 kb on - strand at 979.897 kb on + strand at 979.897 kb on + strand at 979.898 kb on - strand at 979.963 kb on - strand at 979.963 kb on - strand at 979.976 kb on - strand at 980.046 kb on + strand, within CA264_04245 at 980.047 kb on - strand, within CA264_04245 at 980.424 kb on - strand, within CA264_04245 at 980.453 kb on - strand, within CA264_04245 at 980.466 kb on + strand, within CA264_04245 at 980.719 kb on + strand, within CA264_04245 at 980.768 kb on - strand, within CA264_04245 at 980.768 kb on - strand, within CA264_04245 at 980.867 kb on + strand, within CA264_04245 at 980.867 kb on + strand, within CA264_04245 at 980.868 kb on - strand, within CA264_04245 at 980.868 kb on - strand, within CA264_04245 at 980.873 kb on + strand, within CA264_04245 at 981.121 kb on - strand, within CA264_04245 at 981.194 kb on + strand, within CA264_04245 at 981.195 kb on - strand, within CA264_04245 at 981.195 kb on - strand, within CA264_04245 at 981.317 kb on - strand, within CA264_04245 at 981.317 kb on - strand, within CA264_04245 at 981.334 kb on + strand, within CA264_04245 at 981.404 kb on + strand, within CA264_04245 at 981.433 kb on + strand, within CA264_04245 at 981.433 kb on + strand, within CA264_04245 at 981.434 kb on - strand, within CA264_04245 at 981.486 kb on + strand, within CA264_04245 at 981.571 kb on + strand, within CA264_04245 at 981.573 kb on + strand, within CA264_04245 at 981.573 kb on + strand, within CA264_04245 at 981.574 kb on - strand, within CA264_04245 at 981.574 kb on - strand, within CA264_04245 at 981.686 kb on + strand, within CA264_04245 at 981.687 kb on - strand, within CA264_04245 at 981.813 kb on + strand, within CA264_04245 at 981.814 kb on - strand, within CA264_04245 at 981.832 kb on + strand, within CA264_04245 at 981.838 kb on + strand, within CA264_04245 at 981.842 kb on + strand, within CA264_04245 at 981.843 kb on - strand, within CA264_04245 at 981.843 kb on - strand, within CA264_04245 at 981.843 kb on - strand, within CA264_04245 at 981.918 kb on + strand, within CA264_04245 at 981.919 kb on - strand, within CA264_04245 at 981.921 kb on - strand, within CA264_04245 at 981.966 kb on + strand, within CA264_04245 at 981.975 kb on + strand, within CA264_04245 at 982.053 kb on + strand, within CA264_04245 at 982.053 kb on + strand, within CA264_04245 at 982.053 kb on + strand, within CA264_04245 at 982.053 kb on + strand, within CA264_04245 at 982.054 kb on - strand, within CA264_04245 at 982.074 kb on + strand, within CA264_04245 at 982.084 kb on - strand, within CA264_04245 at 982.300 kb on - strand at 982.418 kb on + strand at 982.440 kb on - strand at 982.440 kb on - strand at 982.443 kb on + strand at 982.443 kb on + strand at 982.443 kb on + strand at 982.593 kb on - strand, within CA264_04250 at 982.660 kb on + strand, within CA264_04250 at 982.660 kb on + strand, within CA264_04250 at 982.829 kb on + strand, within CA264_04250 at 982.908 kb on - strand, within CA264_04250 at 983.012 kb on + strand, within CA264_04250 at 983.091 kb on + strand, within CA264_04250 at 983.092 kb on - strand, within CA264_04250 at 983.266 kb on - strand, within CA264_04250 at 983.281 kb on + strand, within CA264_04250 at 983.290 kb on - strand, within CA264_04250 at 983.298 kb on - strand, within CA264_04250 at 983.310 kb on - strand, within CA264_04250 at 983.321 kb on - strand, within CA264_04250 at 983.355 kb on - strand, within CA264_04250 at 983.355 kb on - strand, within CA264_04250 at 983.375 kb on + strand, within CA264_04250 at 983.393 kb on - strand, within CA264_04250
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 978,748 - -0.1 978,771 + -1.1 978,778 - +0.4 978,953 + CA264_04240 0.16 +0.2 978,954 - CA264_04240 0.17 -0.3 979,009 + CA264_04240 0.22 +0.7 979,009 + CA264_04240 0.22 +0.7 979,010 - CA264_04240 0.22 -1.4 979,051 + CA264_04240 0.27 +0.6 979,383 + CA264_04240 0.61 -1.8 979,383 + CA264_04240 0.61 -1.1 979,385 + CA264_04240 0.61 -1.1 979,385 + CA264_04240 0.61 +0.1 979,385 + CA264_04240 0.61 -0.5 979,385 + CA264_04240 0.61 +0.4 979,386 - CA264_04240 0.61 +0.0 979,386 - CA264_04240 0.61 -1.6 979,393 + CA264_04240 0.62 -0.1 979,393 + CA264_04240 0.62 -0.3 979,394 - CA264_04240 0.62 -0.8 979,394 - CA264_04240 0.62 -0.1 979,499 + CA264_04240 0.73 -0.0 979,569 - CA264_04240 0.80 -1.0 979,637 - CA264_04240 0.87 -0.1 979,637 - CA264_04240 0.87 +0.3 979,680 - -0.5 979,775 + -0.3 979,853 - -0.3 979,853 - -0.2 979,865 - +0.3 979,897 + +0.1 979,897 + -0.1 979,898 - -2.2 979,963 - +0.1 979,963 - -0.6 979,976 - +0.8 980,046 + CA264_04245 0.12 +1.7 980,047 - CA264_04245 0.12 -0.1 980,424 - CA264_04245 0.26 -0.2 980,453 - CA264_04245 0.27 -0.3 980,466 + CA264_04245 0.27 -0.3 980,719 + CA264_04245 0.36 -0.5 980,768 - CA264_04245 0.38 -0.2 980,768 - CA264_04245 0.38 -0.5 980,867 + CA264_04245 0.42 +1.0 980,867 + CA264_04245 0.42 -1.5 980,868 - CA264_04245 0.42 +0.7 980,868 - CA264_04245 0.42 -0.1 980,873 + CA264_04245 0.42 -0.6 981,121 - CA264_04245 0.51 -1.0 981,194 + CA264_04245 0.54 -0.1 981,195 - CA264_04245 0.54 +0.1 981,195 - CA264_04245 0.54 -0.1 981,317 - CA264_04245 0.58 -1.3 981,317 - CA264_04245 0.58 -0.4 981,334 + CA264_04245 0.59 -0.4 981,404 + CA264_04245 0.61 -0.3 981,433 + CA264_04245 0.62 -0.8 981,433 + CA264_04245 0.62 -2.1 981,434 - CA264_04245 0.63 -0.4 981,486 + CA264_04245 0.64 +0.2 981,571 + CA264_04245 0.68 +1.1 981,573 + CA264_04245 0.68 +0.6 981,573 + CA264_04245 0.68 -0.7 981,574 - CA264_04245 0.68 -0.1 981,574 - CA264_04245 0.68 -1.1 981,686 + CA264_04245 0.72 -0.3 981,687 - CA264_04245 0.72 -0.2 981,813 + CA264_04245 0.76 +0.2 981,814 - CA264_04245 0.76 +0.1 981,832 + CA264_04245 0.77 +0.7 981,838 + CA264_04245 0.77 -0.7 981,842 + CA264_04245 0.77 +0.7 981,843 - CA264_04245 0.78 +1.3 981,843 - CA264_04245 0.78 +0.1 981,843 - CA264_04245 0.78 -1.4 981,918 + CA264_04245 0.80 +0.0 981,919 - CA264_04245 0.80 -1.0 981,921 - CA264_04245 0.80 +0.2 981,966 + CA264_04245 0.82 +1.2 981,975 + CA264_04245 0.82 -0.3 982,053 + CA264_04245 0.85 -0.6 982,053 + CA264_04245 0.85 -0.1 982,053 + CA264_04245 0.85 -0.5 982,053 + CA264_04245 0.85 -0.6 982,054 - CA264_04245 0.85 -1.6 982,074 + CA264_04245 0.86 +0.1 982,084 - CA264_04245 0.86 +0.1 982,300 - +0.3 982,418 + -0.3 982,440 - +1.4 982,440 - -0.7 982,443 + -1.1 982,443 + +0.2 982,443 + +0.2 982,593 - CA264_04250 0.12 +0.3 982,660 + CA264_04250 0.17 -0.4 982,660 + CA264_04250 0.17 +2.7 982,829 + CA264_04250 0.30 -0.5 982,908 - CA264_04250 0.36 -0.9 983,012 + CA264_04250 0.44 -0.8 983,091 + CA264_04250 0.50 -0.3 983,092 - CA264_04250 0.50 -0.1 983,266 - CA264_04250 0.64 -1.9 983,281 + CA264_04250 0.65 -0.3 983,290 - CA264_04250 0.65 -1.6 983,298 - CA264_04250 0.66 -0.1 983,310 - CA264_04250 0.67 -0.2 983,321 - CA264_04250 0.68 -1.1 983,355 - CA264_04250 0.70 -1.1 983,355 - CA264_04250 0.70 +0.1 983,375 + CA264_04250 0.72 -0.2 983,393 - CA264_04250 0.73 +1.3
Or see this region's nucleotide sequence