Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01775 and CA264_01780 are separated by 72 nucleotides CA264_01780 and CA264_01785 are separated by 45 nucleotides CA264_01785 and CA264_01790 are separated by 33 nucleotides CA264_01790 and CA264_01795 are separated by 154 nucleotides CA264_01795 and CA264_01800 are separated by 144 nucleotides
CA264_01775: CA264_01775 - hypothetical protein, at 420,928 to 421,665
_01775
CA264_01780: CA264_01780 - hypothetical protein, at 421,738 to 422,310
_01780
CA264_01785: CA264_01785 - hypothetical protein, at 422,356 to 422,796
_01785
CA264_01790: CA264_01790 - hypothetical protein, at 422,830 to 423,120
_01790
CA264_01795: CA264_01795 - hypothetical protein, at 423,275 to 423,592
_01795
CA264_01800: CA264_01800 - gluconate kinase, at 423,737 to 425,260
_01800
Position (kb) 422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 421.444 kb on + strand, within CA264_01775 at 421.445 kb on - strand, within CA264_01775 at 421.519 kb on + strand, within CA264_01775 at 421.537 kb on + strand, within CA264_01775 at 421.538 kb on - strand, within CA264_01775 at 421.542 kb on - strand, within CA264_01775 at 421.558 kb on + strand, within CA264_01775 at 421.558 kb on + strand, within CA264_01775 at 421.632 kb on + strand at 421.791 kb on + strand at 421.801 kb on - strand, within CA264_01780 at 421.810 kb on - strand, within CA264_01780 at 421.904 kb on + strand, within CA264_01780 at 421.905 kb on - strand, within CA264_01780 at 421.907 kb on - strand, within CA264_01780 at 421.938 kb on - strand, within CA264_01780 at 421.938 kb on - strand, within CA264_01780 at 421.938 kb on - strand, within CA264_01780 at 422.056 kb on + strand, within CA264_01780 at 422.056 kb on + strand, within CA264_01780 at 422.189 kb on + strand, within CA264_01780 at 422.189 kb on + strand, within CA264_01780 at 422.189 kb on + strand, within CA264_01780 at 422.189 kb on + strand, within CA264_01780 at 422.190 kb on - strand, within CA264_01780 at 422.193 kb on + strand, within CA264_01780 at 422.194 kb on - strand, within CA264_01780 at 422.306 kb on - strand at 422.357 kb on + strand at 422.409 kb on - strand, within CA264_01785 at 422.409 kb on - strand, within CA264_01785 at 422.425 kb on + strand, within CA264_01785 at 422.466 kb on - strand, within CA264_01785 at 422.640 kb on + strand, within CA264_01785 at 422.652 kb on - strand, within CA264_01785 at 422.690 kb on - strand, within CA264_01785 at 422.690 kb on - strand, within CA264_01785 at 422.695 kb on + strand, within CA264_01785 at 422.695 kb on + strand, within CA264_01785 at 422.696 kb on - strand, within CA264_01785 at 422.696 kb on - strand, within CA264_01785 at 422.732 kb on - strand, within CA264_01785 at 422.790 kb on + strand at 422.829 kb on + strand at 422.918 kb on + strand, within CA264_01790 at 422.978 kb on + strand, within CA264_01790 at 423.136 kb on + strand at 423.137 kb on - strand at 423.142 kb on + strand at 423.142 kb on + strand at 423.143 kb on - strand at 423.143 kb on - strand at 423.161 kb on + strand at 423.177 kb on + strand at 423.178 kb on - strand at 423.254 kb on - strand at 423.338 kb on - strand, within CA264_01795 at 423.390 kb on - strand, within CA264_01795 at 423.501 kb on - strand, within CA264_01795 at 423.624 kb on - strand at 423.635 kb on + strand at 423.635 kb on + strand at 423.636 kb on - strand at 423.636 kb on - strand at 423.673 kb on + strand at 423.673 kb on + strand at 423.673 kb on + strand at 423.685 kb on + strand at 423.686 kb on - strand at 423.686 kb on - strand at 423.696 kb on + strand at 423.708 kb on + strand at 423.708 kb on + strand at 423.708 kb on + strand at 423.709 kb on - strand at 423.712 kb on + strand at 423.712 kb on + strand at 423.713 kb on - strand at 423.713 kb on - strand at 423.723 kb on - strand at 423.755 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 421,444 + CA264_01775 0.70 -0.0 421,445 - CA264_01775 0.70 +0.5 421,519 + CA264_01775 0.80 +0.3 421,537 + CA264_01775 0.83 +0.2 421,538 - CA264_01775 0.83 +0.0 421,542 - CA264_01775 0.83 +0.6 421,558 + CA264_01775 0.85 +1.4 421,558 + CA264_01775 0.85 -0.5 421,632 + -0.6 421,791 + -0.2 421,801 - CA264_01780 0.11 +0.2 421,810 - CA264_01780 0.13 +0.4 421,904 + CA264_01780 0.29 +0.0 421,905 - CA264_01780 0.29 -1.2 421,907 - CA264_01780 0.29 +0.4 421,938 - CA264_01780 0.35 -0.9 421,938 - CA264_01780 0.35 -0.0 421,938 - CA264_01780 0.35 -0.9 422,056 + CA264_01780 0.55 -1.5 422,056 + CA264_01780 0.55 -1.1 422,189 + CA264_01780 0.79 +0.2 422,189 + CA264_01780 0.79 +0.2 422,189 + CA264_01780 0.79 -1.8 422,189 + CA264_01780 0.79 -0.1 422,190 - CA264_01780 0.79 -0.4 422,193 + CA264_01780 0.79 -0.5 422,194 - CA264_01780 0.80 -0.0 422,306 - -0.5 422,357 + +0.8 422,409 - CA264_01785 0.12 +0.8 422,409 - CA264_01785 0.12 -1.8 422,425 + CA264_01785 0.16 +2.4 422,466 - CA264_01785 0.25 -0.8 422,640 + CA264_01785 0.64 -1.4 422,652 - CA264_01785 0.67 -1.5 422,690 - CA264_01785 0.76 -0.8 422,690 - CA264_01785 0.76 -0.2 422,695 + CA264_01785 0.77 -0.8 422,695 + CA264_01785 0.77 -0.2 422,696 - CA264_01785 0.77 -1.2 422,696 - CA264_01785 0.77 +0.1 422,732 - CA264_01785 0.85 +0.8 422,790 + -0.8 422,829 + -1.5 422,918 + CA264_01790 0.30 -0.2 422,978 + CA264_01790 0.51 +0.6 423,136 + +0.5 423,137 - +2.4 423,142 + -1.1 423,142 + -3.1 423,143 - -1.5 423,143 - -0.2 423,161 + -1.5 423,177 + -0.2 423,178 - +0.1 423,254 - -0.2 423,338 - CA264_01795 0.20 -0.1 423,390 - CA264_01795 0.36 +0.3 423,501 - CA264_01795 0.71 -0.8 423,624 - +0.2 423,635 + -0.8 423,635 + -0.7 423,636 - +0.4 423,636 - +0.1 423,673 + +1.6 423,673 + -1.2 423,673 + -0.8 423,685 + +1.0 423,686 - -0.0 423,686 - -1.4 423,696 + -0.4 423,708 + -0.3 423,708 + +0.5 423,708 + -0.7 423,709 - -0.1 423,712 + +0.6 423,712 + +0.4 423,713 - -0.8 423,713 - +0.1 423,723 - +3.1 423,755 - -0.1
Or see this region's nucleotide sequence