Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21385 and CA264_21390 are separated by 1 nucleotides CA264_21390 and CA264_21395 are separated by 88 nucleotides CA264_21395 and CA264_21400 are separated by 480 nucleotides
CA264_21385: CA264_21385 - hypothetical protein, at 140,995 to 141,591
_21385
CA264_21390: CA264_21390 - hypothetical protein, at 141,593 to 142,033
_21390
CA264_21395: CA264_21395 - hypothetical protein, at 142,122 to 142,967
_21395
CA264_21400: CA264_21400 - hypothetical protein, at 143,448 to 145,292
_21400
Position (kb)
142
143 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 141.266 kb on - strand, within CA264_21385 at 141.266 kb on - strand, within CA264_21385 at 141.266 kb on - strand, within CA264_21385 at 141.280 kb on - strand, within CA264_21385 at 141.385 kb on - strand, within CA264_21385 at 141.406 kb on + strand, within CA264_21385 at 141.486 kb on - strand, within CA264_21385 at 142.189 kb on + strand at 142.190 kb on - strand at 142.209 kb on + strand, within CA264_21395 at 142.250 kb on - strand, within CA264_21395 at 142.253 kb on + strand, within CA264_21395 at 142.253 kb on + strand, within CA264_21395 at 142.254 kb on - strand, within CA264_21395 at 142.277 kb on - strand, within CA264_21395 at 142.322 kb on + strand, within CA264_21395 at 142.381 kb on - strand, within CA264_21395 at 142.391 kb on + strand, within CA264_21395 at 142.612 kb on + strand, within CA264_21395 at 142.717 kb on + strand, within CA264_21395 at 142.752 kb on - strand, within CA264_21395 at 142.752 kb on - strand, within CA264_21395 at 142.777 kb on + strand, within CA264_21395 at 142.778 kb on - strand, within CA264_21395 at 142.778 kb on - strand, within CA264_21395 at 142.782 kb on + strand, within CA264_21395 at 142.782 kb on + strand, within CA264_21395 at 142.789 kb on + strand, within CA264_21395 at 142.852 kb on + strand, within CA264_21395 at 142.852 kb on + strand, within CA264_21395 at 142.853 kb on - strand, within CA264_21395 at 142.937 kb on - strand at 142.957 kb on - strand at 142.959 kb on + strand at 142.972 kb on + strand at 142.976 kb on - strand at 143.038 kb on + strand at 143.098 kb on + strand at 143.098 kb on + strand at 143.101 kb on + strand at 143.101 kb on + strand at 143.137 kb on + strand at 143.217 kb on + strand at 143.218 kb on - strand at 143.353 kb on - strand at 143.437 kb on + strand at 143.439 kb on + strand at 143.439 kb on + strand at 143.507 kb on + strand at 143.507 kb on + strand at 143.509 kb on + strand at 143.517 kb on + strand at 143.518 kb on - strand at 143.518 kb on - strand at 143.614 kb on - strand at 143.614 kb on - strand at 143.614 kb on - strand at 143.614 kb on - strand at 143.622 kb on - strand at 143.654 kb on + strand, within CA264_21400 at 143.661 kb on - strand, within CA264_21400 at 143.724 kb on - strand, within CA264_21400 at 143.739 kb on + strand, within CA264_21400 at 143.769 kb on + strand, within CA264_21400 at 143.770 kb on - strand, within CA264_21400 at 143.770 kb on - strand, within CA264_21400 at 143.826 kb on + strand, within CA264_21400 at 143.840 kb on + strand, within CA264_21400 at 143.841 kb on - strand, within CA264_21400 at 143.841 kb on - strand, within CA264_21400 at 143.846 kb on - strand, within CA264_21400 at 143.850 kb on - strand, within CA264_21400 at 143.861 kb on - strand, within CA264_21400
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 141,266 - CA264_21385 0.45 +0.3 141,266 - CA264_21385 0.45 +0.5 141,266 - CA264_21385 0.45 +0.6 141,280 - CA264_21385 0.48 +0.2 141,385 - CA264_21385 0.65 -0.3 141,406 + CA264_21385 0.69 +0.1 141,486 - CA264_21385 0.82 -0.7 142,189 + -0.7 142,190 - +1.9 142,209 + CA264_21395 0.10 +1.9 142,250 - CA264_21395 0.15 +1.9 142,253 + CA264_21395 0.15 +2.9 142,253 + CA264_21395 0.15 -0.4 142,254 - CA264_21395 0.16 -0.4 142,277 - CA264_21395 0.18 -0.0 142,322 + CA264_21395 0.24 -1.1 142,381 - CA264_21395 0.31 +1.2 142,391 + CA264_21395 0.32 -0.9 142,612 + CA264_21395 0.58 +1.1 142,717 + CA264_21395 0.70 -1.0 142,752 - CA264_21395 0.74 +0.8 142,752 - CA264_21395 0.74 +0.3 142,777 + CA264_21395 0.77 +0.9 142,778 - CA264_21395 0.78 +0.3 142,778 - CA264_21395 0.78 -0.1 142,782 + CA264_21395 0.78 -0.9 142,782 + CA264_21395 0.78 +0.1 142,789 + CA264_21395 0.79 +0.5 142,852 + CA264_21395 0.86 -1.6 142,852 + CA264_21395 0.86 -0.8 142,853 - CA264_21395 0.86 -0.7 142,937 - +0.4 142,957 - -0.1 142,959 + +0.3 142,972 + +0.2 142,976 - +0.8 143,038 + +1.7 143,098 + +0.9 143,098 + -0.4 143,101 + -0.1 143,101 + +0.9 143,137 + +0.3 143,217 + -0.6 143,218 - -0.5 143,353 - -0.1 143,437 + +0.2 143,439 + -0.2 143,439 + -0.7 143,507 + -0.1 143,507 + -0.5 143,509 + +1.3 143,517 + -0.1 143,518 - -0.0 143,518 - +0.1 143,614 - -1.5 143,614 - -0.1 143,614 - +0.9 143,614 - -1.5 143,622 - -0.2 143,654 + CA264_21400 0.11 -1.0 143,661 - CA264_21400 0.12 -0.0 143,724 - CA264_21400 0.15 -0.1 143,739 + CA264_21400 0.16 +0.2 143,769 + CA264_21400 0.17 -0.4 143,770 - CA264_21400 0.17 -2.0 143,770 - CA264_21400 0.17 +0.4 143,826 + CA264_21400 0.20 -0.5 143,840 + CA264_21400 0.21 -0.1 143,841 - CA264_21400 0.21 +0.2 143,841 - CA264_21400 0.21 -0.9 143,846 - CA264_21400 0.22 +1.6 143,850 - CA264_21400 0.22 -0.3 143,861 - CA264_21400 0.22 +0.6
Or see this region's nucleotide sequence