Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21065

Experiment: Ponti_ML7_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21060 and CA264_21065 are separated by 138 nucleotidesCA264_21065 and CA264_21070 are separated by 39 nucleotidesCA264_21070 and CA264_21075 are separated by 124 nucleotides CA264_21060: CA264_21060 - hypothetical protein, at 75,952 to 77,211 _21060 CA264_21065: CA264_21065 - transcriptional regulator, at 77,350 to 77,685 _21065 CA264_21070: CA264_21070 - transcriptional repressor, at 77,725 to 78,138 _21070 CA264_21075: CA264_21075 - ATP-binding protein, at 78,263 to 79,024 _21075 Position (kb) 77 78Strain fitness (log2 ratio) -2 -1 0 1 2 3at 76.376 kb on - strand, within CA264_21060at 76.376 kb on - strand, within CA264_21060at 76.396 kb on + strand, within CA264_21060at 76.396 kb on + strand, within CA264_21060at 76.396 kb on + strand, within CA264_21060at 76.396 kb on + strand, within CA264_21060at 76.449 kb on + strand, within CA264_21060at 76.574 kb on - strand, within CA264_21060at 76.610 kb on + strand, within CA264_21060at 76.611 kb on - strand, within CA264_21060at 76.698 kb on + strand, within CA264_21060at 76.723 kb on - strand, within CA264_21060at 76.750 kb on + strand, within CA264_21060at 76.751 kb on - strand, within CA264_21060at 76.752 kb on + strand, within CA264_21060at 76.753 kb on - strand, within CA264_21060at 76.753 kb on - strand, within CA264_21060at 76.763 kb on + strand, within CA264_21060at 76.763 kb on + strand, within CA264_21060at 76.763 kb on + strand, within CA264_21060at 76.764 kb on - strand, within CA264_21060at 76.765 kb on + strand, within CA264_21060at 76.765 kb on + strand, within CA264_21060at 76.766 kb on - strand, within CA264_21060at 76.766 kb on - strand, within CA264_21060at 76.766 kb on - strand, within CA264_21060at 76.766 kb on - strand, within CA264_21060at 76.767 kb on + strand, within CA264_21060at 76.767 kb on + strand, within CA264_21060at 76.767 kb on + strand, within CA264_21060at 76.767 kb on + strand, within CA264_21060at 76.768 kb on - strand, within CA264_21060at 76.768 kb on - strand, within CA264_21060at 76.831 kb on - strand, within CA264_21060at 76.831 kb on - strand, within CA264_21060at 76.831 kb on - strand, within CA264_21060at 76.854 kb on + strand, within CA264_21060at 76.854 kb on + strand, within CA264_21060at 76.855 kb on - strand, within CA264_21060at 76.858 kb on + strand, within CA264_21060at 76.858 kb on + strand, within CA264_21060at 76.859 kb on - strand, within CA264_21060at 76.874 kb on + strand, within CA264_21060at 76.874 kb on + strand, within CA264_21060at 76.875 kb on - strand, within CA264_21060at 76.884 kb on + strand, within CA264_21060at 77.076 kb on - strand, within CA264_21060at 77.076 kb on - strand, within CA264_21060at 77.088 kb on + strandat 77.108 kb on + strandat 77.108 kb on + strandat 77.109 kb on - strandat 77.109 kb on - strandat 77.133 kb on + strandat 77.149 kb on + strandat 77.161 kb on + strandat 77.162 kb on - strandat 77.162 kb on - strandat 77.169 kb on + strandat 77.216 kb on + strandat 77.216 kb on + strandat 77.302 kb on - strandat 77.326 kb on - strandat 77.327 kb on + strandat 77.370 kb on + strandat 77.397 kb on - strand, within CA264_21065at 77.573 kb on + strand, within CA264_21065at 77.573 kb on + strand, within CA264_21065at 77.621 kb on - strand, within CA264_21065at 77.621 kb on - strand, within CA264_21065at 77.709 kb on + strandat 77.717 kb on + strandat 77.718 kb on - strandat 77.826 kb on + strand, within CA264_21070at 77.876 kb on + strand, within CA264_21070at 77.877 kb on - strand, within CA264_21070at 77.877 kb on - strand, within CA264_21070at 77.877 kb on - strand, within CA264_21070at 77.916 kb on - strand, within CA264_21070at 77.916 kb on - strand, within CA264_21070at 77.916 kb on - strand, within CA264_21070at 77.950 kb on + strand, within CA264_21070at 77.951 kb on - strand, within CA264_21070at 77.951 kb on - strand, within CA264_21070at 77.951 kb on - strand, within CA264_21070at 78.060 kb on + strand, within CA264_21070at 78.061 kb on - strand, within CA264_21070at 78.061 kb on - strand, within CA264_21070at 78.062 kb on + strand, within CA264_21070at 78.063 kb on - strand, within CA264_21070at 78.063 kb on - strand, within CA264_21070at 78.095 kb on + strand, within CA264_21070at 78.095 kb on + strand, within CA264_21070at 78.136 kb on + strandat 78.137 kb on - strandat 78.137 kb on - strandat 78.145 kb on - strandat 78.181 kb on - strandat 78.191 kb on + strandat 78.191 kb on + strandat 78.191 kb on + strandat 78.191 kb on + strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.194 kb on - strandat 78.203 kb on + strandat 78.203 kb on + strandat 78.204 kb on - strandat 78.204 kb on - strandat 78.204 kb on - strandat 78.206 kb on - strandat 78.207 kb on + strandat 78.221 kb on - strandat 78.247 kb on + strandat 78.248 kb on - strandat 78.251 kb on + strandat 78.252 kb on - strandat 78.325 kb on - strandat 78.346 kb on - strand, within CA264_21075at 78.375 kb on + strand, within CA264_21075at 78.406 kb on + strand, within CA264_21075at 78.406 kb on + strand, within CA264_21075at 78.407 kb on - strand, within CA264_21075at 78.441 kb on - strand, within CA264_21075at 78.441 kb on - strand, within CA264_21075at 78.456 kb on + strand, within CA264_21075at 78.457 kb on - strand, within CA264_21075at 78.469 kb on - strand, within CA264_21075at 78.533 kb on + strand, within CA264_21075at 78.534 kb on - strand, within CA264_21075at 78.534 kb on - strand, within CA264_21075at 78.534 kb on - strand, within CA264_21075at 78.534 kb on - strand, within CA264_21075at 78.633 kb on - strand, within CA264_21075

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Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
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76,376 - CA264_21060 0.34 -0.7
76,376 - CA264_21060 0.34 -0.3
76,396 + CA264_21060 0.35 +0.2
76,396 + CA264_21060 0.35 -0.3
76,396 + CA264_21060 0.35 -0.1
76,396 + CA264_21060 0.35 +1.4
76,449 + CA264_21060 0.39 +0.2
76,574 - CA264_21060 0.49 +0.1
76,610 + CA264_21060 0.52 +0.0
76,611 - CA264_21060 0.52 +0.9
76,698 + CA264_21060 0.59 +1.1
76,723 - CA264_21060 0.61 +1.9
76,750 + CA264_21060 0.63 -1.2
76,751 - CA264_21060 0.63 -0.5
76,752 + CA264_21060 0.63 +0.4
76,753 - CA264_21060 0.64 +1.1
76,753 - CA264_21060 0.64 -0.1
76,763 + CA264_21060 0.64 +0.6
76,763 + CA264_21060 0.64 +0.9
76,763 + CA264_21060 0.64 +0.9
76,764 - CA264_21060 0.64 +0.9
76,765 + CA264_21060 0.65 +2.4
76,765 + CA264_21060 0.65 -0.4
76,766 - CA264_21060 0.65 +0.5
76,766 - CA264_21060 0.65 +0.9
76,766 - CA264_21060 0.65 -0.0
76,766 - CA264_21060 0.65 -0.2
76,767 + CA264_21060 0.65 +0.3
76,767 + CA264_21060 0.65 +0.4
76,767 + CA264_21060 0.65 +1.2
76,767 + CA264_21060 0.65 +0.3
76,768 - CA264_21060 0.65 +0.4
76,768 - CA264_21060 0.65 +1.0
76,831 - CA264_21060 0.70 -0.4
76,831 - CA264_21060 0.70 +0.3
76,831 - CA264_21060 0.70 +0.3
76,854 + CA264_21060 0.72 -0.5
76,854 + CA264_21060 0.72 +0.6
76,855 - CA264_21060 0.72 +1.1
76,858 + CA264_21060 0.72 +0.3
76,858 + CA264_21060 0.72 -1.0
76,859 - CA264_21060 0.72 +0.0
76,874 + CA264_21060 0.73 +0.9
76,874 + CA264_21060 0.73 +0.2
76,875 - CA264_21060 0.73 +0.9
76,884 + CA264_21060 0.74 -0.6
77,076 - CA264_21060 0.89 +0.3
77,076 - CA264_21060 0.89 -0.6
77,088 + +0.9
77,108 + +0.3
77,108 + -1.1
77,109 - +0.7
77,109 - +0.1
77,133 + +2.2
77,149 + +1.7
77,161 + +3.4
77,162 - -0.1
77,162 - -0.1
77,169 + -1.5
77,216 + -0.4
77,216 + +1.1
77,302 - -0.5
77,326 - +1.3
77,327 + -1.7
77,370 + -0.1
77,397 - CA264_21065 0.14 -1.5
77,573 + CA264_21065 0.66 +0.9
77,573 + CA264_21065 0.66 +0.9
77,621 - CA264_21065 0.81 +0.4
77,621 - CA264_21065 0.81 -1.3
77,709 + +0.3
77,717 + -0.6
77,718 - +0.5
77,826 + CA264_21070 0.24 +0.1
77,876 + CA264_21070 0.36 -1.0
77,877 - CA264_21070 0.37 -1.7
77,877 - CA264_21070 0.37 +1.4
77,877 - CA264_21070 0.37 +1.9
77,916 - CA264_21070 0.46 -1.5
77,916 - CA264_21070 0.46 +0.2
77,916 - CA264_21070 0.46 -0.4
77,950 + CA264_21070 0.54 +0.1
77,951 - CA264_21070 0.55 +1.0
77,951 - CA264_21070 0.55 +2.0
77,951 - CA264_21070 0.55 +0.1
78,060 + CA264_21070 0.81 -0.1
78,061 - CA264_21070 0.81 +0.3
78,061 - CA264_21070 0.81 +0.3
78,062 + CA264_21070 0.81 -0.7
78,063 - CA264_21070 0.82 -1.5
78,063 - CA264_21070 0.82 -1.5
78,095 + CA264_21070 0.89 -0.1
78,095 + CA264_21070 0.89 +0.9
78,136 + +0.6
78,137 - -0.1
78,137 - -0.4
78,145 - +0.2
78,181 - +0.3
78,191 + +0.4
78,191 + -1.0
78,191 + +0.1
78,191 + +0.1
78,192 - -0.3
78,192 - +0.2
78,192 - -0.3
78,192 - -0.5
78,192 - -0.8
78,192 - -0.0
78,194 - -2.2
78,203 + -0.7
78,203 + +0.0
78,204 - -0.7
78,204 - -0.5
78,204 - -0.0
78,206 - -1.1
78,207 + +0.6
78,221 - +0.9
78,247 + -0.7
78,248 - -0.5
78,251 + +1.9
78,252 - -0.1
78,325 - -2.0
78,346 - CA264_21075 0.11 +0.3
78,375 + CA264_21075 0.15 +0.9
78,406 + CA264_21075 0.19 +1.1
78,406 + CA264_21075 0.19 +1.0
78,407 - CA264_21075 0.19 +0.7
78,441 - CA264_21075 0.23 +0.3
78,441 - CA264_21075 0.23 +0.1
78,456 + CA264_21075 0.25 -0.7
78,457 - CA264_21075 0.25 -0.4
78,469 - CA264_21075 0.27 -0.1
78,533 + CA264_21075 0.35 -0.1
78,534 - CA264_21075 0.36 +0.2
78,534 - CA264_21075 0.36 -0.2
78,534 - CA264_21075 0.36 +1.3
78,534 - CA264_21075 0.36 +0.2
78,633 - CA264_21075 0.49 +0.3

Or see this region's nucleotide sequence