Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20710

Experiment: Ponti_ML7_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20705 and CA264_20710 are separated by 245 nucleotidesCA264_20710 and CA264_20715 are separated by 10 nucleotides CA264_20705: CA264_20705 - N-acyl-L-amino acid amidohydrolase, at 4,767,386 to 4,768,720 _20705 CA264_20710: CA264_20710 - hypothetical protein, at 4,768,966 to 4,769,721 _20710 CA264_20715: CA264_20715 - metallophosphatase, at 4,769,732 to 4,770,664 _20715 Position (kb) 4768 4769 4770Strain fitness (log2 ratio) -1 0 1 2at 4768.040 kb on - strand, within CA264_20705at 4768.049 kb on + strand, within CA264_20705at 4768.168 kb on + strand, within CA264_20705at 4768.209 kb on + strand, within CA264_20705at 4768.237 kb on - strand, within CA264_20705at 4768.237 kb on - strand, within CA264_20705at 4768.240 kb on + strand, within CA264_20705at 4768.306 kb on + strand, within CA264_20705at 4768.306 kb on + strand, within CA264_20705at 4768.306 kb on + strand, within CA264_20705at 4768.361 kb on - strand, within CA264_20705at 4768.361 kb on - strand, within CA264_20705at 4768.428 kb on - strand, within CA264_20705at 4768.494 kb on + strand, within CA264_20705at 4768.494 kb on + strand, within CA264_20705at 4768.560 kb on + strand, within CA264_20705at 4768.562 kb on + strand, within CA264_20705at 4768.562 kb on + strand, within CA264_20705at 4768.562 kb on + strand, within CA264_20705at 4768.562 kb on + strand, within CA264_20705at 4768.563 kb on - strand, within CA264_20705at 4768.563 kb on - strand, within CA264_20705at 4768.563 kb on - strand, within CA264_20705at 4768.563 kb on - strand, within CA264_20705at 4768.572 kb on + strand, within CA264_20705at 4768.572 kb on + strand, within CA264_20705at 4768.634 kb on + strandat 4768.666 kb on - strandat 4768.675 kb on + strandat 4768.694 kb on + strandat 4768.778 kb on + strandat 4768.833 kb on + strandat 4768.834 kb on - strandat 4768.834 kb on - strandat 4768.834 kb on - strandat 4768.844 kb on - strandat 4768.847 kb on + strandat 4768.887 kb on + strandat 4768.906 kb on - strandat 4768.906 kb on - strandat 4768.955 kb on + strandat 4768.961 kb on + strandat 4768.962 kb on - strandat 4769.092 kb on - strand, within CA264_20710at 4769.141 kb on + strand, within CA264_20710at 4769.162 kb on + strand, within CA264_20710at 4769.293 kb on - strand, within CA264_20710at 4769.405 kb on + strand, within CA264_20710at 4769.496 kb on + strand, within CA264_20710at 4769.497 kb on - strand, within CA264_20710at 4769.536 kb on - strand, within CA264_20710at 4769.652 kb on - strandat 4769.691 kb on + strandat 4769.692 kb on - strandat 4769.936 kb on - strand, within CA264_20715at 4770.009 kb on - strand, within CA264_20715at 4770.062 kb on + strand, within CA264_20715at 4770.063 kb on - strand, within CA264_20715at 4770.346 kb on - strand, within CA264_20715at 4770.364 kb on + strand, within CA264_20715at 4770.365 kb on - strand, within CA264_20715

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Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
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4,768,040 - CA264_20705 0.49 -0.9
4,768,049 + CA264_20705 0.50 +0.4
4,768,168 + CA264_20705 0.59 +0.1
4,768,209 + CA264_20705 0.62 +0.5
4,768,237 - CA264_20705 0.64 -0.4
4,768,237 - CA264_20705 0.64 -0.3
4,768,240 + CA264_20705 0.64 +0.1
4,768,306 + CA264_20705 0.69 -0.5
4,768,306 + CA264_20705 0.69 -0.9
4,768,306 + CA264_20705 0.69 +0.2
4,768,361 - CA264_20705 0.73 +0.5
4,768,361 - CA264_20705 0.73 -0.8
4,768,428 - CA264_20705 0.78 -0.3
4,768,494 + CA264_20705 0.83 +0.5
4,768,494 + CA264_20705 0.83 +0.3
4,768,560 + CA264_20705 0.88 +0.6
4,768,562 + CA264_20705 0.88 -0.8
4,768,562 + CA264_20705 0.88 +0.5
4,768,562 + CA264_20705 0.88 +0.6
4,768,562 + CA264_20705 0.88 +0.7
4,768,563 - CA264_20705 0.88 +0.1
4,768,563 - CA264_20705 0.88 +0.2
4,768,563 - CA264_20705 0.88 -0.9
4,768,563 - CA264_20705 0.88 -0.5
4,768,572 + CA264_20705 0.89 -0.1
4,768,572 + CA264_20705 0.89 +0.2
4,768,634 + -0.4
4,768,666 - +0.7
4,768,675 + +0.3
4,768,694 + -0.9
4,768,778 + +2.1
4,768,833 + +0.2
4,768,834 - -0.7
4,768,834 - +0.6
4,768,834 - -0.5
4,768,844 - +0.1
4,768,847 + +0.8
4,768,887 + +1.5
4,768,906 - +0.4
4,768,906 - +0.7
4,768,955 + +2.5
4,768,961 + -0.5
4,768,962 - +1.0
4,769,092 - CA264_20710 0.17 +0.2
4,769,141 + CA264_20710 0.23 +1.7
4,769,162 + CA264_20710 0.26 +1.6
4,769,293 - CA264_20710 0.43 +2.1
4,769,405 + CA264_20710 0.58 +0.5
4,769,496 + CA264_20710 0.70 +1.4
4,769,497 - CA264_20710 0.70 +1.1
4,769,536 - CA264_20710 0.75 +0.4
4,769,652 - +1.1
4,769,691 + +2.1
4,769,692 - +0.3
4,769,936 - CA264_20715 0.22 +0.2
4,770,009 - CA264_20715 0.30 +2.1
4,770,062 + CA264_20715 0.35 +1.0
4,770,063 - CA264_20715 0.35 +0.5
4,770,346 - CA264_20715 0.66 +0.6
4,770,364 + CA264_20715 0.68 +1.0
4,770,365 - CA264_20715 0.68 +0.1

Or see this region's nucleotide sequence