Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20705 and CA264_20710 are separated by 245 nucleotides CA264_20710 and CA264_20715 are separated by 10 nucleotides
CA264_20705: CA264_20705 - N-acyl-L-amino acid amidohydrolase, at 4,767,386 to 4,768,720
_20705
CA264_20710: CA264_20710 - hypothetical protein, at 4,768,966 to 4,769,721
_20710
CA264_20715: CA264_20715 - metallophosphatase, at 4,769,732 to 4,770,664
_20715
Position (kb)
4768
4769
4770 Strain fitness (log2 ratio)
-1
0
1
2 at 4768.040 kb on - strand, within CA264_20705 at 4768.049 kb on + strand, within CA264_20705 at 4768.168 kb on + strand, within CA264_20705 at 4768.209 kb on + strand, within CA264_20705 at 4768.237 kb on - strand, within CA264_20705 at 4768.237 kb on - strand, within CA264_20705 at 4768.240 kb on + strand, within CA264_20705 at 4768.306 kb on + strand, within CA264_20705 at 4768.306 kb on + strand, within CA264_20705 at 4768.306 kb on + strand, within CA264_20705 at 4768.361 kb on - strand, within CA264_20705 at 4768.361 kb on - strand, within CA264_20705 at 4768.428 kb on - strand, within CA264_20705 at 4768.494 kb on + strand, within CA264_20705 at 4768.494 kb on + strand, within CA264_20705 at 4768.560 kb on + strand, within CA264_20705 at 4768.562 kb on + strand, within CA264_20705 at 4768.562 kb on + strand, within CA264_20705 at 4768.562 kb on + strand, within CA264_20705 at 4768.562 kb on + strand, within CA264_20705 at 4768.563 kb on - strand, within CA264_20705 at 4768.563 kb on - strand, within CA264_20705 at 4768.563 kb on - strand, within CA264_20705 at 4768.563 kb on - strand, within CA264_20705 at 4768.572 kb on + strand, within CA264_20705 at 4768.572 kb on + strand, within CA264_20705 at 4768.634 kb on + strand at 4768.666 kb on - strand at 4768.675 kb on + strand at 4768.694 kb on + strand at 4768.778 kb on + strand at 4768.833 kb on + strand at 4768.834 kb on - strand at 4768.834 kb on - strand at 4768.834 kb on - strand at 4768.844 kb on - strand at 4768.847 kb on + strand at 4768.887 kb on + strand at 4768.906 kb on - strand at 4768.906 kb on - strand at 4768.955 kb on + strand at 4768.961 kb on + strand at 4768.962 kb on - strand at 4769.092 kb on - strand, within CA264_20710 at 4769.141 kb on + strand, within CA264_20710 at 4769.162 kb on + strand, within CA264_20710 at 4769.293 kb on - strand, within CA264_20710 at 4769.405 kb on + strand, within CA264_20710 at 4769.496 kb on + strand, within CA264_20710 at 4769.497 kb on - strand, within CA264_20710 at 4769.536 kb on - strand, within CA264_20710 at 4769.652 kb on - strand at 4769.691 kb on + strand at 4769.692 kb on - strand at 4769.936 kb on - strand, within CA264_20715 at 4770.009 kb on - strand, within CA264_20715 at 4770.062 kb on + strand, within CA264_20715 at 4770.063 kb on - strand, within CA264_20715 at 4770.346 kb on - strand, within CA264_20715 at 4770.364 kb on + strand, within CA264_20715 at 4770.365 kb on - strand, within CA264_20715
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 4,768,040 - CA264_20705 0.49 -0.9 4,768,049 + CA264_20705 0.50 +0.4 4,768,168 + CA264_20705 0.59 +0.1 4,768,209 + CA264_20705 0.62 +0.5 4,768,237 - CA264_20705 0.64 -0.4 4,768,237 - CA264_20705 0.64 -0.3 4,768,240 + CA264_20705 0.64 +0.1 4,768,306 + CA264_20705 0.69 -0.5 4,768,306 + CA264_20705 0.69 -0.9 4,768,306 + CA264_20705 0.69 +0.2 4,768,361 - CA264_20705 0.73 +0.5 4,768,361 - CA264_20705 0.73 -0.8 4,768,428 - CA264_20705 0.78 -0.3 4,768,494 + CA264_20705 0.83 +0.5 4,768,494 + CA264_20705 0.83 +0.3 4,768,560 + CA264_20705 0.88 +0.6 4,768,562 + CA264_20705 0.88 -0.8 4,768,562 + CA264_20705 0.88 +0.5 4,768,562 + CA264_20705 0.88 +0.6 4,768,562 + CA264_20705 0.88 +0.7 4,768,563 - CA264_20705 0.88 +0.1 4,768,563 - CA264_20705 0.88 +0.2 4,768,563 - CA264_20705 0.88 -0.9 4,768,563 - CA264_20705 0.88 -0.5 4,768,572 + CA264_20705 0.89 -0.1 4,768,572 + CA264_20705 0.89 +0.2 4,768,634 + -0.4 4,768,666 - +0.7 4,768,675 + +0.3 4,768,694 + -0.9 4,768,778 + +2.1 4,768,833 + +0.2 4,768,834 - -0.7 4,768,834 - +0.6 4,768,834 - -0.5 4,768,844 - +0.1 4,768,847 + +0.8 4,768,887 + +1.5 4,768,906 - +0.4 4,768,906 - +0.7 4,768,955 + +2.5 4,768,961 + -0.5 4,768,962 - +1.0 4,769,092 - CA264_20710 0.17 +0.2 4,769,141 + CA264_20710 0.23 +1.7 4,769,162 + CA264_20710 0.26 +1.6 4,769,293 - CA264_20710 0.43 +2.1 4,769,405 + CA264_20710 0.58 +0.5 4,769,496 + CA264_20710 0.70 +1.4 4,769,497 - CA264_20710 0.70 +1.1 4,769,536 - CA264_20710 0.75 +0.4 4,769,652 - +1.1 4,769,691 + +2.1 4,769,692 - +0.3 4,769,936 - CA264_20715 0.22 +0.2 4,770,009 - CA264_20715 0.30 +2.1 4,770,062 + CA264_20715 0.35 +1.0 4,770,063 - CA264_20715 0.35 +0.5 4,770,346 - CA264_20715 0.66 +0.6 4,770,364 + CA264_20715 0.68 +1.0 4,770,365 - CA264_20715 0.68 +0.1
Or see this region's nucleotide sequence