Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20110 and CA264_20115 are separated by 179 nucleotides CA264_20115 and CA264_20120 are separated by 75 nucleotides CA264_20120 and CA264_20125 are separated by 447 nucleotides
CA264_20110: CA264_20110 - DNA helicase RecQ, at 4,636,044 to 4,638,224
_20110
CA264_20115: CA264_20115 - phosphoribosylamine--glycine ligase, at 4,638,404 to 4,639,693
_20115
CA264_20120: CA264_20120 - hypothetical protein, at 4,639,769 to 4,640,182
_20120
CA264_20125: CA264_20125 - hypothetical protein, at 4,640,630 to 4,640,971
_20125
Position (kb)
4638
4639
4640 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4637.532 kb on - strand, within CA264_20110 at 4637.571 kb on - strand, within CA264_20110 at 4637.817 kb on - strand, within CA264_20110 at 4637.844 kb on + strand, within CA264_20110 at 4638.054 kb on + strand at 4638.055 kb on - strand at 4638.239 kb on - strand at 4638.296 kb on + strand at 4638.309 kb on - strand at 4638.309 kb on - strand at 4638.337 kb on + strand at 4638.337 kb on + strand at 4638.374 kb on + strand at 4638.379 kb on - strand at 4638.403 kb on + strand at 4638.412 kb on - strand at 4638.412 kb on - strand at 4638.420 kb on + strand at 4638.530 kb on - strand at 4638.530 kb on - strand at 4638.540 kb on + strand, within CA264_20115 at 4638.544 kb on + strand, within CA264_20115 at 4638.545 kb on - strand, within CA264_20115 at 4638.592 kb on + strand, within CA264_20115 at 4638.593 kb on - strand, within CA264_20115 at 4638.593 kb on - strand, within CA264_20115 at 4638.673 kb on + strand, within CA264_20115 at 4638.673 kb on + strand, within CA264_20115 at 4638.673 kb on + strand, within CA264_20115 at 4638.785 kb on - strand, within CA264_20115 at 4638.833 kb on + strand, within CA264_20115 at 4638.897 kb on - strand, within CA264_20115 at 4638.980 kb on + strand, within CA264_20115 at 4638.980 kb on + strand, within CA264_20115 at 4639.011 kb on + strand, within CA264_20115 at 4639.012 kb on - strand, within CA264_20115 at 4639.032 kb on - strand, within CA264_20115 at 4639.059 kb on - strand, within CA264_20115 at 4639.059 kb on - strand, within CA264_20115 at 4639.060 kb on + strand, within CA264_20115 at 4639.061 kb on - strand, within CA264_20115 at 4639.081 kb on + strand, within CA264_20115 at 4639.081 kb on + strand, within CA264_20115 at 4639.389 kb on + strand, within CA264_20115 at 4639.389 kb on + strand, within CA264_20115 at 4639.416 kb on + strand, within CA264_20115 at 4639.417 kb on - strand, within CA264_20115 at 4639.525 kb on - strand, within CA264_20115 at 4639.631 kb on - strand at 4639.692 kb on - strand at 4639.709 kb on - strand at 4639.770 kb on + strand at 4639.770 kb on + strand at 4639.776 kb on + strand at 4639.962 kb on - strand, within CA264_20120 at 4640.070 kb on - strand, within CA264_20120 at 4640.088 kb on - strand, within CA264_20120 at 4640.141 kb on - strand at 4640.167 kb on + strand at 4640.170 kb on - strand at 4640.178 kb on + strand at 4640.300 kb on + strand at 4640.300 kb on + strand at 4640.349 kb on - strand at 4640.380 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.388 kb on + strand at 4640.388 kb on + strand at 4640.503 kb on + strand at 4640.504 kb on - strand at 4640.542 kb on + strand at 4640.543 kb on - strand at 4640.577 kb on + strand at 4640.578 kb on - strand at 4640.578 kb on - strand at 4640.578 kb on - strand at 4640.601 kb on - strand at 4640.616 kb on - strand at 4640.629 kb on + strand at 4640.649 kb on - strand at 4640.653 kb on + strand at 4640.653 kb on + strand at 4640.654 kb on - strand at 4640.682 kb on + strand, within CA264_20125 at 4640.693 kb on - strand, within CA264_20125
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 4,637,532 - CA264_20110 0.68 +3.1 4,637,571 - CA264_20110 0.70 +1.6 4,637,817 - CA264_20110 0.81 +1.5 4,637,844 + CA264_20110 0.83 +0.5 4,638,054 + +1.5 4,638,055 - +2.1 4,638,239 - -0.2 4,638,296 + +1.5 4,638,309 - +0.2 4,638,309 - -0.5 4,638,337 + -0.5 4,638,337 + -0.0 4,638,374 + -0.0 4,638,379 - -0.2 4,638,403 + -1.9 4,638,412 - -2.1 4,638,412 - +0.1 4,638,420 + +0.3 4,638,530 - -0.9 4,638,530 - -1.0 4,638,540 + CA264_20115 0.11 +0.6 4,638,544 + CA264_20115 0.11 -0.3 4,638,545 - CA264_20115 0.11 -0.6 4,638,592 + CA264_20115 0.15 -1.4 4,638,593 - CA264_20115 0.15 +0.1 4,638,593 - CA264_20115 0.15 -0.0 4,638,673 + CA264_20115 0.21 -0.1 4,638,673 + CA264_20115 0.21 +0.9 4,638,673 + CA264_20115 0.21 -0.3 4,638,785 - CA264_20115 0.30 -0.4 4,638,833 + CA264_20115 0.33 +0.5 4,638,897 - CA264_20115 0.38 -0.1 4,638,980 + CA264_20115 0.45 -0.3 4,638,980 + CA264_20115 0.45 +0.8 4,639,011 + CA264_20115 0.47 +1.8 4,639,012 - CA264_20115 0.47 -0.4 4,639,032 - CA264_20115 0.49 -0.9 4,639,059 - CA264_20115 0.51 +1.5 4,639,059 - CA264_20115 0.51 -0.9 4,639,060 + CA264_20115 0.51 -1.6 4,639,061 - CA264_20115 0.51 -0.3 4,639,081 + CA264_20115 0.52 +0.3 4,639,081 + CA264_20115 0.52 -1.1 4,639,389 + CA264_20115 0.76 +0.1 4,639,389 + CA264_20115 0.76 +0.2 4,639,416 + CA264_20115 0.78 +1.5 4,639,417 - CA264_20115 0.79 +0.8 4,639,525 - CA264_20115 0.87 -2.9 4,639,631 - +0.4 4,639,692 - +0.4 4,639,709 - -0.7 4,639,770 + -0.0 4,639,770 + -0.5 4,639,776 + -0.3 4,639,962 - CA264_20120 0.47 -0.3 4,640,070 - CA264_20120 0.73 -1.5 4,640,088 - CA264_20120 0.77 -0.5 4,640,141 - -0.5 4,640,167 + -0.2 4,640,170 - +0.3 4,640,178 + +0.3 4,640,300 + +0.1 4,640,300 + -0.0 4,640,349 - -0.2 4,640,380 + -0.5 4,640,385 + +0.1 4,640,385 + -0.3 4,640,385 + +0.4 4,640,385 + -0.4 4,640,385 + +1.3 4,640,385 + -0.1 4,640,385 + +0.2 4,640,385 + -1.1 4,640,385 + -0.5 4,640,385 + +0.3 4,640,385 + +0.0 4,640,385 + +0.9 4,640,385 + +0.1 4,640,385 + +0.5 4,640,385 + +0.3 4,640,385 + +1.5 4,640,385 + -0.1 4,640,385 + -0.1 4,640,385 + -0.6 4,640,385 + +0.7 4,640,385 + +0.1 4,640,385 + -0.6 4,640,386 - -0.0 4,640,386 - +0.1 4,640,386 - -1.3 4,640,386 - -0.0 4,640,386 - -0.5 4,640,386 - -0.2 4,640,386 - +2.8 4,640,386 - +0.5 4,640,386 - +0.1 4,640,386 - -0.1 4,640,386 - +0.9 4,640,386 - -0.4 4,640,386 - +1.5 4,640,386 - +0.5 4,640,386 - -0.0 4,640,386 - -0.0 4,640,386 - -1.5 4,640,386 - -0.3 4,640,388 + -0.2 4,640,388 + +1.8 4,640,503 + +0.5 4,640,504 - +0.9 4,640,542 + +0.3 4,640,543 - -2.1 4,640,577 + +0.2 4,640,578 - -0.5 4,640,578 - +0.1 4,640,578 - -1.4 4,640,601 - -0.4 4,640,616 - -0.9 4,640,629 + +0.1 4,640,649 - -0.3 4,640,653 + +0.2 4,640,653 + +0.8 4,640,654 - -0.1 4,640,682 + CA264_20125 0.15 -0.0 4,640,693 - CA264_20125 0.18 +0.7
Or see this region's nucleotide sequence