Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16915 and CA264_16920 are separated by 101 nucleotides CA264_16920 and CA264_16925 are separated by 9 nucleotides CA264_16925 and CA264_16930 are separated by 174 nucleotides
CA264_16915: CA264_16915 - hypothetical protein, at 3,938,975 to 3,940,822
_16915
CA264_16920: CA264_16920 - zinc/iron permease, at 3,940,924 to 3,941,673
_16920
CA264_16925: CA264_16925 - SAM-dependent methyltransferase, at 3,941,683 to 3,942,426
_16925
CA264_16930: CA264_16930 - hypothetical protein, at 3,942,601 to 3,942,906
_16930
Position (kb)
3940
3941
3942 Strain fitness (log2 ratio)
-2
-1
0
1 at 3939.952 kb on + strand, within CA264_16915 at 3939.952 kb on + strand, within CA264_16915 at 3940.046 kb on + strand, within CA264_16915 at 3940.069 kb on - strand, within CA264_16915 at 3940.160 kb on + strand, within CA264_16915 at 3940.160 kb on + strand, within CA264_16915 at 3940.160 kb on + strand, within CA264_16915 at 3940.161 kb on - strand, within CA264_16915 at 3940.161 kb on - strand, within CA264_16915 at 3940.277 kb on + strand, within CA264_16915 at 3940.278 kb on - strand, within CA264_16915 at 3940.367 kb on + strand, within CA264_16915 at 3940.407 kb on - strand, within CA264_16915 at 3940.455 kb on + strand, within CA264_16915 at 3940.547 kb on + strand, within CA264_16915 at 3940.547 kb on + strand, within CA264_16915 at 3940.547 kb on + strand, within CA264_16915 at 3940.554 kb on + strand, within CA264_16915 at 3940.555 kb on - strand, within CA264_16915 at 3940.598 kb on + strand, within CA264_16915 at 3940.609 kb on + strand, within CA264_16915 at 3940.609 kb on + strand, within CA264_16915 at 3940.609 kb on + strand, within CA264_16915 at 3940.621 kb on - strand, within CA264_16915 at 3940.655 kb on + strand at 3940.655 kb on + strand at 3940.726 kb on - strand at 3940.738 kb on + strand at 3940.739 kb on - strand at 3940.783 kb on - strand at 3940.783 kb on - strand at 3940.881 kb on + strand at 3940.921 kb on + strand at 3941.659 kb on + strand at 3941.665 kb on + strand at 3941.665 kb on + strand at 3941.701 kb on + strand at 3941.701 kb on + strand at 3941.702 kb on - strand at 3941.744 kb on + strand at 3941.784 kb on + strand, within CA264_16925 at 3941.785 kb on - strand, within CA264_16925 at 3941.785 kb on - strand, within CA264_16925 at 3941.837 kb on + strand, within CA264_16925 at 3941.837 kb on + strand, within CA264_16925 at 3941.838 kb on - strand, within CA264_16925 at 3941.917 kb on + strand, within CA264_16925 at 3942.051 kb on + strand, within CA264_16925 at 3942.066 kb on - strand, within CA264_16925 at 3942.236 kb on + strand, within CA264_16925 at 3942.302 kb on + strand, within CA264_16925 at 3942.302 kb on + strand, within CA264_16925 at 3942.361 kb on + strand at 3942.361 kb on + strand at 3942.362 kb on - strand at 3942.368 kb on + strand at 3942.368 kb on + strand at 3942.371 kb on + strand at 3942.372 kb on - strand at 3942.459 kb on - strand at 3942.468 kb on - strand at 3942.528 kb on - strand at 3942.649 kb on + strand, within CA264_16930
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 3,939,952 + CA264_16915 0.53 -0.9 3,939,952 + CA264_16915 0.53 +0.1 3,940,046 + CA264_16915 0.58 +0.3 3,940,069 - CA264_16915 0.59 -0.2 3,940,160 + CA264_16915 0.64 +0.0 3,940,160 + CA264_16915 0.64 -1.7 3,940,160 + CA264_16915 0.64 +0.5 3,940,161 - CA264_16915 0.64 -0.6 3,940,161 - CA264_16915 0.64 +0.0 3,940,277 + CA264_16915 0.70 +0.7 3,940,278 - CA264_16915 0.71 +0.8 3,940,367 + CA264_16915 0.75 +0.0 3,940,407 - CA264_16915 0.77 -1.6 3,940,455 + CA264_16915 0.80 -0.3 3,940,547 + CA264_16915 0.85 -0.0 3,940,547 + CA264_16915 0.85 -0.8 3,940,547 + CA264_16915 0.85 +0.1 3,940,554 + CA264_16915 0.85 +0.3 3,940,555 - CA264_16915 0.85 -0.2 3,940,598 + CA264_16915 0.88 -0.3 3,940,609 + CA264_16915 0.88 -0.4 3,940,609 + CA264_16915 0.88 +0.8 3,940,609 + CA264_16915 0.88 -0.2 3,940,621 - CA264_16915 0.89 +0.5 3,940,655 + +0.9 3,940,655 + +0.5 3,940,726 - -0.1 3,940,738 + -0.0 3,940,739 - +0.1 3,940,783 - +0.3 3,940,783 - +1.1 3,940,881 + +0.3 3,940,921 + -0.2 3,941,659 + +0.6 3,941,665 + -0.8 3,941,665 + +1.7 3,941,701 + -0.0 3,941,701 + -1.0 3,941,702 - +0.2 3,941,744 + -0.4 3,941,784 + CA264_16925 0.14 -0.6 3,941,785 - CA264_16925 0.14 +1.3 3,941,785 - CA264_16925 0.14 -0.9 3,941,837 + CA264_16925 0.21 -0.7 3,941,837 + CA264_16925 0.21 -0.5 3,941,838 - CA264_16925 0.21 -0.2 3,941,917 + CA264_16925 0.31 -0.5 3,942,051 + CA264_16925 0.49 -0.8 3,942,066 - CA264_16925 0.51 -0.0 3,942,236 + CA264_16925 0.74 +0.2 3,942,302 + CA264_16925 0.83 +1.1 3,942,302 + CA264_16925 0.83 -1.0 3,942,361 + +1.7 3,942,361 + -1.1 3,942,362 - +0.2 3,942,368 + -0.6 3,942,368 + -1.8 3,942,371 + -0.5 3,942,372 - -0.2 3,942,459 - +0.4 3,942,468 - -0.4 3,942,528 - +0.1 3,942,649 + CA264_16930 0.16 -0.2
Or see this region's nucleotide sequence