Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16590 and CA264_16595 are separated by 67 nucleotides CA264_16595 and CA264_16600 are separated by 184 nucleotides
CA264_16590: CA264_16590 - site-2 protease family protein, at 3,855,848 to 3,856,927
_16590
CA264_16595: CA264_16595 - hypothetical protein, at 3,856,995 to 3,857,309
_16595
CA264_16600: CA264_16600 - alpha/beta hydrolase, at 3,857,494 to 3,858,300
_16600
Position (kb)
3856
3857
3858 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3856.271 kb on + strand, within CA264_16590 at 3856.369 kb on + strand, within CA264_16590 at 3856.441 kb on + strand, within CA264_16590 at 3856.577 kb on + strand, within CA264_16590 at 3856.578 kb on - strand, within CA264_16590 at 3856.578 kb on - strand, within CA264_16590 at 3856.651 kb on + strand, within CA264_16590 at 3856.956 kb on - strand at 3856.987 kb on + strand at 3856.987 kb on + strand at 3857.014 kb on + strand at 3857.018 kb on - strand at 3857.018 kb on - strand at 3857.021 kb on - strand at 3857.111 kb on - strand, within CA264_16595 at 3857.125 kb on + strand, within CA264_16595 at 3857.126 kb on - strand, within CA264_16595 at 3857.126 kb on - strand, within CA264_16595 at 3857.131 kb on + strand, within CA264_16595 at 3857.131 kb on + strand, within CA264_16595 at 3857.131 kb on + strand, within CA264_16595 at 3857.131 kb on + strand, within CA264_16595 at 3857.132 kb on - strand, within CA264_16595 at 3857.144 kb on - strand, within CA264_16595 at 3857.213 kb on - strand, within CA264_16595 at 3857.252 kb on + strand, within CA264_16595 at 3857.253 kb on - strand, within CA264_16595 at 3857.258 kb on - strand, within CA264_16595 at 3857.258 kb on - strand, within CA264_16595 at 3857.264 kb on - strand, within CA264_16595 at 3857.264 kb on - strand, within CA264_16595 at 3857.279 kb on - strand at 3857.307 kb on + strand at 3857.308 kb on - strand at 3857.313 kb on - strand at 3857.379 kb on + strand at 3857.380 kb on - strand at 3857.396 kb on + strand at 3857.397 kb on - strand at 3857.428 kb on - strand at 3857.458 kb on + strand at 3857.525 kb on + strand at 3857.526 kb on - strand at 3857.527 kb on + strand at 3857.528 kb on - strand at 3857.528 kb on - strand at 3857.530 kb on + strand at 3857.530 kb on + strand at 3857.531 kb on - strand at 3857.531 kb on - strand at 3857.531 kb on - strand at 3857.598 kb on + strand, within CA264_16600 at 3857.623 kb on - strand, within CA264_16600 at 3857.638 kb on + strand, within CA264_16600 at 3857.638 kb on + strand, within CA264_16600 at 3857.638 kb on + strand, within CA264_16600 at 3857.640 kb on + strand, within CA264_16600 at 3857.765 kb on + strand, within CA264_16600 at 3857.766 kb on - strand, within CA264_16600 at 3857.771 kb on + strand, within CA264_16600 at 3857.818 kb on + strand, within CA264_16600 at 3857.867 kb on + strand, within CA264_16600 at 3857.868 kb on - strand, within CA264_16600 at 3857.876 kb on - strand, within CA264_16600 at 3857.913 kb on - strand, within CA264_16600 at 3857.974 kb on + strand, within CA264_16600 at 3858.015 kb on + strand, within CA264_16600 at 3858.016 kb on - strand, within CA264_16600 at 3858.089 kb on - strand, within CA264_16600 at 3858.207 kb on - strand, within CA264_16600 at 3858.213 kb on + strand, within CA264_16600 at 3858.213 kb on + strand, within CA264_16600 at 3858.214 kb on - strand, within CA264_16600 at 3858.231 kb on + strand at 3858.298 kb on + strand at 3858.307 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 3,856,271 + CA264_16590 0.39 +1.5 3,856,369 + CA264_16590 0.48 -0.1 3,856,441 + CA264_16590 0.55 +0.9 3,856,577 + CA264_16590 0.68 -0.2 3,856,578 - CA264_16590 0.68 +0.1 3,856,578 - CA264_16590 0.68 +0.2 3,856,651 + CA264_16590 0.74 -0.8 3,856,956 - +0.5 3,856,987 + -0.0 3,856,987 + -0.7 3,857,014 + -0.7 3,857,018 - -0.9 3,857,018 - +0.8 3,857,021 - -0.5 3,857,111 - CA264_16595 0.37 -0.4 3,857,125 + CA264_16595 0.41 -0.6 3,857,126 - CA264_16595 0.42 +0.5 3,857,126 - CA264_16595 0.42 +0.2 3,857,131 + CA264_16595 0.43 -0.5 3,857,131 + CA264_16595 0.43 -0.5 3,857,131 + CA264_16595 0.43 +0.2 3,857,131 + CA264_16595 0.43 -0.2 3,857,132 - CA264_16595 0.43 -2.0 3,857,144 - CA264_16595 0.47 +0.7 3,857,213 - CA264_16595 0.69 +0.5 3,857,252 + CA264_16595 0.82 +0.3 3,857,253 - CA264_16595 0.82 -0.5 3,857,258 - CA264_16595 0.83 -0.5 3,857,258 - CA264_16595 0.83 -0.2 3,857,264 - CA264_16595 0.85 -0.0 3,857,264 - CA264_16595 0.85 +0.2 3,857,279 - -0.3 3,857,307 + -0.5 3,857,308 - -0.2 3,857,313 - +0.5 3,857,379 + -0.3 3,857,380 - -1.4 3,857,396 + +1.0 3,857,397 - +0.6 3,857,428 - +0.2 3,857,458 + +0.3 3,857,525 + +0.9 3,857,526 - +0.2 3,857,527 + +0.3 3,857,528 - +0.5 3,857,528 - -1.1 3,857,530 + -0.2 3,857,530 + +0.6 3,857,531 - -0.3 3,857,531 - +0.2 3,857,531 - -0.1 3,857,598 + CA264_16600 0.13 -0.3 3,857,623 - CA264_16600 0.16 -1.0 3,857,638 + CA264_16600 0.18 -0.4 3,857,638 + CA264_16600 0.18 +0.5 3,857,638 + CA264_16600 0.18 +1.2 3,857,640 + CA264_16600 0.18 -0.7 3,857,765 + CA264_16600 0.34 -0.3 3,857,766 - CA264_16600 0.34 -0.5 3,857,771 + CA264_16600 0.34 -0.1 3,857,818 + CA264_16600 0.40 +0.5 3,857,867 + CA264_16600 0.46 +0.2 3,857,868 - CA264_16600 0.46 -0.9 3,857,876 - CA264_16600 0.47 +0.3 3,857,913 - CA264_16600 0.52 -0.2 3,857,974 + CA264_16600 0.59 -2.1 3,858,015 + CA264_16600 0.65 +0.0 3,858,016 - CA264_16600 0.65 +0.1 3,858,089 - CA264_16600 0.74 -0.4 3,858,207 - CA264_16600 0.88 +0.7 3,858,213 + CA264_16600 0.89 -0.1 3,858,213 + CA264_16600 0.89 -0.1 3,858,214 - CA264_16600 0.89 -1.4 3,858,231 + +2.0 3,858,298 + -0.1 3,858,307 + -0.2
Or see this region's nucleotide sequence