Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12560 and CA264_12565 are separated by 147 nucleotides CA264_12565 and CA264_12570 are separated by 193 nucleotides
CA264_12560: CA264_12560 - hypothetical protein, at 2,930,890 to 2,931,621
_12560
CA264_12565: CA264_12565 - competence/damage-inducible protein A, at 2,931,769 to 2,933,028
_12565
CA264_12570: CA264_12570 - 2-oxoglutarate dehydrogenase, at 2,933,222 to 2,934,589
_12570
Position (kb)
2931
2932
2933
2934 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2930.791 kb on - strand at 2930.814 kb on - strand at 2930.841 kb on + strand at 2930.846 kb on - strand at 2930.870 kb on - strand at 2930.880 kb on - strand at 2930.881 kb on + strand at 2930.882 kb on - strand at 2931.041 kb on - strand, within CA264_12560 at 2931.090 kb on - strand, within CA264_12560 at 2931.130 kb on - strand, within CA264_12560 at 2931.180 kb on - strand, within CA264_12560 at 2931.230 kb on - strand, within CA264_12560 at 2931.306 kb on + strand, within CA264_12560 at 2931.306 kb on + strand, within CA264_12560 at 2931.307 kb on - strand, within CA264_12560 at 2931.310 kb on + strand, within CA264_12560 at 2931.310 kb on + strand, within CA264_12560 at 2931.310 kb on + strand, within CA264_12560 at 2931.310 kb on + strand, within CA264_12560 at 2931.311 kb on - strand, within CA264_12560 at 2931.340 kb on + strand, within CA264_12560 at 2931.457 kb on + strand, within CA264_12560 at 2931.457 kb on + strand, within CA264_12560 at 2931.592 kb on + strand at 2931.593 kb on - strand at 2931.593 kb on - strand at 2931.593 kb on - strand at 2931.595 kb on - strand at 2931.595 kb on - strand at 2931.595 kb on - strand at 2931.606 kb on - strand at 2931.678 kb on - strand at 2931.678 kb on - strand at 2931.692 kb on + strand at 2931.693 kb on - strand at 2931.697 kb on - strand at 2931.706 kb on + strand at 2931.744 kb on - strand at 2931.750 kb on - strand at 2931.750 kb on - strand at 2931.768 kb on + strand at 2931.768 kb on + strand at 2931.769 kb on - strand at 2931.781 kb on - strand at 2931.800 kb on + strand at 2931.801 kb on - strand at 2931.964 kb on - strand, within CA264_12565 at 2932.035 kb on + strand, within CA264_12565 at 2932.036 kb on - strand, within CA264_12565 at 2932.036 kb on - strand, within CA264_12565 at 2932.320 kb on - strand, within CA264_12565 at 2932.320 kb on - strand, within CA264_12565 at 2932.408 kb on + strand, within CA264_12565 at 2932.408 kb on + strand, within CA264_12565 at 2932.409 kb on - strand, within CA264_12565 at 2932.409 kb on - strand, within CA264_12565 at 2932.651 kb on - strand, within CA264_12565 at 2932.651 kb on - strand, within CA264_12565 at 2932.689 kb on - strand, within CA264_12565 at 2933.013 kb on + strand at 2933.013 kb on + strand at 2933.031 kb on + strand at 2933.167 kb on - strand at 2933.167 kb on - strand at 2933.167 kb on - strand at 2933.168 kb on + strand at 2933.168 kb on + strand at 2933.168 kb on + strand at 2933.169 kb on - strand at 2933.169 kb on - strand at 2933.169 kb on - strand at 2933.169 kb on - strand at 2933.173 kb on - strand at 2933.173 kb on - strand at 2933.173 kb on - strand at 2933.174 kb on + strand at 2933.212 kb on - strand at 2933.222 kb on - strand at 2933.222 kb on - strand at 2933.222 kb on - strand at 2933.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 2,930,791 - -0.0 2,930,814 - +0.2 2,930,841 + -0.1 2,930,846 - -1.4 2,930,870 - +1.5 2,930,880 - +0.0 2,930,881 + -0.0 2,930,882 - +0.3 2,931,041 - CA264_12560 0.21 -0.7 2,931,090 - CA264_12560 0.27 -0.2 2,931,130 - CA264_12560 0.33 -0.7 2,931,180 - CA264_12560 0.40 +0.8 2,931,230 - CA264_12560 0.46 -0.2 2,931,306 + CA264_12560 0.57 -3.0 2,931,306 + CA264_12560 0.57 +1.5 2,931,307 - CA264_12560 0.57 +0.7 2,931,310 + CA264_12560 0.57 +0.2 2,931,310 + CA264_12560 0.57 -0.2 2,931,310 + CA264_12560 0.57 +0.3 2,931,310 + CA264_12560 0.57 +0.2 2,931,311 - CA264_12560 0.58 -0.2 2,931,340 + CA264_12560 0.61 -0.1 2,931,457 + CA264_12560 0.77 -1.5 2,931,457 + CA264_12560 0.77 -0.3 2,931,592 + -0.9 2,931,593 - -1.1 2,931,593 - +1.9 2,931,593 - +0.7 2,931,595 - -0.1 2,931,595 - -0.7 2,931,595 - +1.3 2,931,606 - +0.1 2,931,678 - -0.2 2,931,678 - +0.4 2,931,692 + -0.9 2,931,693 - -0.3 2,931,697 - +1.5 2,931,706 + -0.1 2,931,744 - +1.2 2,931,750 - -0.1 2,931,750 - -0.3 2,931,768 + +0.5 2,931,768 + -0.3 2,931,769 - +0.5 2,931,781 - +0.5 2,931,800 + +0.7 2,931,801 - -1.5 2,931,964 - CA264_12565 0.15 +0.4 2,932,035 + CA264_12565 0.21 -1.8 2,932,036 - CA264_12565 0.21 -0.5 2,932,036 - CA264_12565 0.21 +0.2 2,932,320 - CA264_12565 0.44 -1.5 2,932,320 - CA264_12565 0.44 -0.3 2,932,408 + CA264_12565 0.51 +1.5 2,932,408 + CA264_12565 0.51 +0.3 2,932,409 - CA264_12565 0.51 -1.1 2,932,409 - CA264_12565 0.51 -0.6 2,932,651 - CA264_12565 0.70 -0.8 2,932,651 - CA264_12565 0.70 -0.5 2,932,689 - CA264_12565 0.73 -0.5 2,933,013 + +0.1 2,933,013 + +0.5 2,933,031 + -2.7 2,933,167 - -1.5 2,933,167 - +0.5 2,933,167 - +0.1 2,933,168 + +0.1 2,933,168 + +1.6 2,933,168 + -0.4 2,933,169 - -0.3 2,933,169 - +1.7 2,933,169 - +0.5 2,933,169 - -0.2 2,933,173 - +0.3 2,933,173 - -0.3 2,933,173 - -0.3 2,933,174 + +0.4 2,933,212 - +0.6 2,933,222 - +0.9 2,933,222 - +0.5 2,933,222 - +1.8 2,933,233 - -0.3
Or see this region's nucleotide sequence