Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11145

Experiment: Ponti_ML7_MIT diversity barseq

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_11140 and CA264_11145 overlap by 8 nucleotidesCA264_11145 and CA264_11150 are separated by 24 nucleotides CA264_11140: CA264_11140 - 1,4-alpha-glucan branching enzyme, at 2,572,572 to 2,574,899 _11140 CA264_11145: CA264_11145 - maltose alpha-D-glucosyltransferase, at 2,574,892 to 2,578,227 _11145 CA264_11150: CA264_11150 - alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase, at 2,578,252 to 2,580,273 _11150 Position (kb) 2574 2575 2576 2577 2578 2579Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2574.019 kb on + strand, within CA264_11140at 2574.020 kb on - strand, within CA264_11140at 2574.056 kb on + strand, within CA264_11140at 2574.057 kb on - strand, within CA264_11140at 2574.057 kb on - strand, within CA264_11140at 2574.091 kb on + strand, within CA264_11140at 2574.173 kb on - strand, within CA264_11140at 2574.182 kb on - strand, within CA264_11140at 2574.200 kb on - strand, within CA264_11140at 2574.200 kb on - strand, within CA264_11140at 2574.205 kb on + strand, within CA264_11140at 2574.206 kb on - strand, within CA264_11140at 2574.206 kb on - strand, within CA264_11140at 2574.355 kb on + strand, within CA264_11140at 2574.355 kb on + strand, within CA264_11140at 2574.356 kb on - strand, within CA264_11140at 2574.439 kb on + strand, within CA264_11140at 2574.448 kb on + strand, within CA264_11140at 2574.448 kb on + strand, within CA264_11140at 2574.449 kb on - strand, within CA264_11140at 2574.469 kb on + strand, within CA264_11140at 2574.674 kb on + strandat 2574.674 kb on + strandat 2574.920 kb on + strandat 2574.974 kb on + strandat 2575.091 kb on + strandat 2575.106 kb on + strandat 2575.107 kb on - strandat 2575.112 kb on + strandat 2575.113 kb on - strandat 2575.139 kb on + strandat 2575.185 kb on + strandat 2575.186 kb on - strandat 2575.298 kb on + strand, within CA264_11145at 2575.338 kb on - strand, within CA264_11145at 2575.338 kb on - strand, within CA264_11145at 2575.464 kb on + strand, within CA264_11145at 2575.563 kb on + strand, within CA264_11145at 2575.563 kb on + strand, within CA264_11145at 2575.682 kb on - strand, within CA264_11145at 2575.849 kb on - strand, within CA264_11145at 2576.043 kb on + strand, within CA264_11145at 2576.196 kb on - strand, within CA264_11145at 2576.335 kb on + strand, within CA264_11145at 2576.336 kb on - strand, within CA264_11145at 2576.594 kb on + strand, within CA264_11145at 2576.595 kb on - strand, within CA264_11145at 2576.624 kb on + strand, within CA264_11145at 2576.624 kb on + strand, within CA264_11145at 2576.765 kb on + strand, within CA264_11145at 2576.817 kb on + strand, within CA264_11145at 2576.818 kb on - strand, within CA264_11145at 2576.927 kb on + strand, within CA264_11145at 2576.927 kb on + strand, within CA264_11145at 2576.928 kb on - strand, within CA264_11145at 2576.962 kb on + strand, within CA264_11145at 2577.051 kb on - strand, within CA264_11145at 2577.051 kb on - strand, within CA264_11145at 2577.053 kb on + strand, within CA264_11145at 2577.053 kb on + strand, within CA264_11145at 2577.058 kb on - strand, within CA264_11145at 2577.083 kb on + strand, within CA264_11145at 2577.084 kb on - strand, within CA264_11145at 2577.086 kb on + strand, within CA264_11145at 2577.087 kb on - strand, within CA264_11145at 2577.087 kb on - strand, within CA264_11145at 2577.087 kb on - strand, within CA264_11145at 2577.087 kb on - strand, within CA264_11145at 2577.181 kb on + strand, within CA264_11145at 2577.181 kb on + strand, within CA264_11145at 2577.182 kb on - strand, within CA264_11145at 2577.182 kb on - strand, within CA264_11145at 2577.217 kb on - strand, within CA264_11145at 2577.219 kb on - strand, within CA264_11145at 2577.225 kb on + strand, within CA264_11145at 2577.226 kb on - strand, within CA264_11145at 2577.226 kb on - strand, within CA264_11145at 2577.228 kb on - strand, within CA264_11145at 2577.233 kb on + strand, within CA264_11145at 2577.234 kb on - strand, within CA264_11145at 2577.378 kb on + strand, within CA264_11145at 2577.379 kb on - strand, within CA264_11145at 2577.407 kb on + strand, within CA264_11145at 2577.498 kb on - strand, within CA264_11145at 2577.587 kb on + strand, within CA264_11145at 2577.588 kb on - strand, within CA264_11145at 2577.648 kb on + strand, within CA264_11145at 2577.648 kb on + strand, within CA264_11145at 2577.649 kb on - strand, within CA264_11145at 2577.722 kb on + strand, within CA264_11145at 2577.764 kb on + strand, within CA264_11145at 2577.764 kb on + strand, within CA264_11145at 2577.765 kb on - strand, within CA264_11145at 2577.765 kb on - strand, within CA264_11145at 2577.795 kb on - strand, within CA264_11145at 2577.795 kb on - strand, within CA264_11145at 2577.821 kb on + strand, within CA264_11145at 2577.822 kb on - strand, within CA264_11145at 2577.822 kb on - strand, within CA264_11145at 2577.838 kb on - strand, within CA264_11145at 2577.891 kb on + strand, within CA264_11145at 2577.891 kb on + strand, within CA264_11145at 2577.934 kb on - strandat 2577.977 kb on + strandat 2577.995 kb on - strandat 2577.999 kb on - strandat 2578.014 kb on - strandat 2578.041 kb on - strandat 2578.067 kb on - strandat 2578.072 kb on + strandat 2578.153 kb on + strandat 2578.153 kb on + strandat 2578.155 kb on + strandat 2578.155 kb on + strandat 2578.167 kb on - strandat 2578.171 kb on - strandat 2578.171 kb on - strandat 2578.183 kb on - strandat 2578.185 kb on - strandat 2578.185 kb on - strandat 2578.228 kb on - strandat 2578.228 kb on - strandat 2578.372 kb on + strandat 2578.372 kb on + strandat 2578.376 kb on + strandat 2578.404 kb on + strandat 2578.433 kb on + strandat 2578.433 kb on + strandat 2578.433 kb on + strandat 2578.433 kb on + strandat 2578.434 kb on - strandat 2578.531 kb on - strand, within CA264_11150at 2578.608 kb on + strand, within CA264_11150at 2578.627 kb on + strand, within CA264_11150at 2578.653 kb on + strand, within CA264_11150at 2578.706 kb on + strand, within CA264_11150at 2578.721 kb on + strand, within CA264_11150at 2578.721 kb on + strand, within CA264_11150at 2578.722 kb on - strand, within CA264_11150at 2578.725 kb on - strand, within CA264_11150at 2578.725 kb on - strand, within CA264_11150at 2578.788 kb on - strand, within CA264_11150at 2578.881 kb on + strand, within CA264_11150at 2578.882 kb on - strand, within CA264_11150at 2578.882 kb on - strand, within CA264_11150at 2578.941 kb on - strand, within CA264_11150at 2578.979 kb on + strand, within CA264_11150at 2578.979 kb on + strand, within CA264_11150at 2578.980 kb on - strand, within CA264_11150at 2578.984 kb on - strand, within CA264_11150at 2578.986 kb on - strand, within CA264_11150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
remove
2,574,019 + CA264_11140 0.62 +1.3
2,574,020 - CA264_11140 0.62 -0.1
2,574,056 + CA264_11140 0.64 +0.5
2,574,057 - CA264_11140 0.64 +0.5
2,574,057 - CA264_11140 0.64 +0.4
2,574,091 + CA264_11140 0.65 +0.1
2,574,173 - CA264_11140 0.69 +1.0
2,574,182 - CA264_11140 0.69 +1.0
2,574,200 - CA264_11140 0.70 +0.1
2,574,200 - CA264_11140 0.70 +0.4
2,574,205 + CA264_11140 0.70 +0.1
2,574,206 - CA264_11140 0.70 +0.3
2,574,206 - CA264_11140 0.70 +0.3
2,574,355 + CA264_11140 0.77 +0.3
2,574,355 + CA264_11140 0.77 +1.3
2,574,356 - CA264_11140 0.77 -0.2
2,574,439 + CA264_11140 0.80 +0.0
2,574,448 + CA264_11140 0.81 -0.7
2,574,448 + CA264_11140 0.81 -0.2
2,574,449 - CA264_11140 0.81 +0.5
2,574,469 + CA264_11140 0.81 -1.1
2,574,674 + -0.7
2,574,674 + -0.5
2,574,920 + -2.1
2,574,974 + -0.2
2,575,091 + -0.4
2,575,106 + +0.0
2,575,107 - -1.7
2,575,112 + +0.4
2,575,113 - -1.3
2,575,139 + -1.2
2,575,185 + +0.1
2,575,186 - +0.3
2,575,298 + CA264_11145 0.12 +0.4
2,575,338 - CA264_11145 0.13 +0.3
2,575,338 - CA264_11145 0.13 +0.1
2,575,464 + CA264_11145 0.17 +0.3
2,575,563 + CA264_11145 0.20 +0.2
2,575,563 + CA264_11145 0.20 +1.5
2,575,682 - CA264_11145 0.24 -0.1
2,575,849 - CA264_11145 0.29 +0.2
2,576,043 + CA264_11145 0.35 -0.2
2,576,196 - CA264_11145 0.39 -0.7
2,576,335 + CA264_11145 0.43 -0.5
2,576,336 - CA264_11145 0.43 -1.5
2,576,594 + CA264_11145 0.51 +1.3
2,576,595 - CA264_11145 0.51 -0.5
2,576,624 + CA264_11145 0.52 +0.8
2,576,624 + CA264_11145 0.52 +1.0
2,576,765 + CA264_11145 0.56 -0.1
2,576,817 + CA264_11145 0.58 +0.8
2,576,818 - CA264_11145 0.58 -1.1
2,576,927 + CA264_11145 0.61 +0.2
2,576,927 + CA264_11145 0.61 +0.2
2,576,928 - CA264_11145 0.61 +0.3
2,576,962 + CA264_11145 0.62 +0.7
2,577,051 - CA264_11145 0.65 +2.0
2,577,051 - CA264_11145 0.65 -0.0
2,577,053 + CA264_11145 0.65 +0.1
2,577,053 + CA264_11145 0.65 -0.4
2,577,058 - CA264_11145 0.65 +0.1
2,577,083 + CA264_11145 0.66 -2.1
2,577,084 - CA264_11145 0.66 +0.3
2,577,086 + CA264_11145 0.66 -0.4
2,577,087 - CA264_11145 0.66 +0.5
2,577,087 - CA264_11145 0.66 -0.8
2,577,087 - CA264_11145 0.66 +2.8
2,577,087 - CA264_11145 0.66 +0.5
2,577,181 + CA264_11145 0.69 -1.5
2,577,181 + CA264_11145 0.69 -0.3
2,577,182 - CA264_11145 0.69 +1.8
2,577,182 - CA264_11145 0.69 -0.4
2,577,217 - CA264_11145 0.70 -1.5
2,577,219 - CA264_11145 0.70 +0.8
2,577,225 + CA264_11145 0.70 +0.8
2,577,226 - CA264_11145 0.70 +0.5
2,577,226 - CA264_11145 0.70 +0.2
2,577,228 - CA264_11145 0.70 -0.8
2,577,233 + CA264_11145 0.70 -0.1
2,577,234 - CA264_11145 0.70 +0.1
2,577,378 + CA264_11145 0.75 -0.7
2,577,379 - CA264_11145 0.75 +0.1
2,577,407 + CA264_11145 0.75 -0.1
2,577,498 - CA264_11145 0.78 -0.1
2,577,587 + CA264_11145 0.81 -0.2
2,577,588 - CA264_11145 0.81 -0.8
2,577,648 + CA264_11145 0.83 +0.9
2,577,648 + CA264_11145 0.83 -1.7
2,577,649 - CA264_11145 0.83 +0.7
2,577,722 + CA264_11145 0.85 +0.2
2,577,764 + CA264_11145 0.86 +0.5
2,577,764 + CA264_11145 0.86 -0.5
2,577,765 - CA264_11145 0.86 -1.1
2,577,765 - CA264_11145 0.86 -0.9
2,577,795 - CA264_11145 0.87 -1.3
2,577,795 - CA264_11145 0.87 +1.2
2,577,821 + CA264_11145 0.88 +0.2
2,577,822 - CA264_11145 0.88 -0.4
2,577,822 - CA264_11145 0.88 -0.3
2,577,838 - CA264_11145 0.88 +0.5
2,577,891 + CA264_11145 0.90 +0.3
2,577,891 + CA264_11145 0.90 +0.8
2,577,934 - -1.4
2,577,977 + -0.8
2,577,995 - +1.1
2,577,999 - +0.5
2,578,014 - -0.3
2,578,041 - +0.5
2,578,067 - +1.0
2,578,072 + -0.4
2,578,153 + +0.0
2,578,153 + +1.0
2,578,155 + -0.0
2,578,155 + -0.2
2,578,167 - -1.7
2,578,171 - -0.1
2,578,171 - -0.0
2,578,183 - +0.5
2,578,185 - +1.8
2,578,185 - +0.1
2,578,228 - -0.7
2,578,228 - +0.0
2,578,372 + +0.5
2,578,372 + -0.1
2,578,376 + -2.1
2,578,404 + +0.5
2,578,433 + +0.5
2,578,433 + +0.0
2,578,433 + +3.6
2,578,433 + +0.7
2,578,434 - +0.7
2,578,531 - CA264_11150 0.14 +0.4
2,578,608 + CA264_11150 0.18 -0.5
2,578,627 + CA264_11150 0.19 -1.1
2,578,653 + CA264_11150 0.20 +0.2
2,578,706 + CA264_11150 0.22 -0.5
2,578,721 + CA264_11150 0.23 +0.2
2,578,721 + CA264_11150 0.23 +0.4
2,578,722 - CA264_11150 0.23 +0.2
2,578,725 - CA264_11150 0.23 +0.5
2,578,725 - CA264_11150 0.23 +0.7
2,578,788 - CA264_11150 0.27 +0.5
2,578,881 + CA264_11150 0.31 +2.0
2,578,882 - CA264_11150 0.31 +2.0
2,578,882 - CA264_11150 0.31 -1.0
2,578,941 - CA264_11150 0.34 +0.6
2,578,979 + CA264_11150 0.36 -0.0
2,578,979 + CA264_11150 0.36 +0.3
2,578,980 - CA264_11150 0.36 -0.9
2,578,984 - CA264_11150 0.36 -0.5
2,578,986 - CA264_11150 0.36 +0.8

Or see this region's nucleotide sequence