Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10320 and CA264_10325 are separated by 194 nucleotides CA264_10325 and CA264_10330 overlap by 13 nucleotides
CA264_10320: CA264_10320 - hypothetical protein, at 2,398,731 to 2,399,615
_10320
CA264_10325: CA264_10325 - plasmid mobilization relaxosome protein MobC, at 2,399,810 to 2,400,199
_10325
CA264_10330: CA264_10330 - hypothetical protein, at 2,400,187 to 2,401,440
_10330
Position (kb)
2399
2400
2401 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2398.849 kb on - strand, within CA264_10320 at 2398.862 kb on - strand, within CA264_10320 at 2398.914 kb on + strand, within CA264_10320 at 2398.915 kb on - strand, within CA264_10320 at 2399.060 kb on - strand, within CA264_10320 at 2399.139 kb on - strand, within CA264_10320 at 2399.171 kb on - strand, within CA264_10320 at 2399.181 kb on + strand, within CA264_10320 at 2399.238 kb on + strand, within CA264_10320 at 2399.239 kb on - strand, within CA264_10320 at 2399.455 kb on + strand, within CA264_10320 at 2399.455 kb on + strand, within CA264_10320 at 2399.455 kb on + strand, within CA264_10320 at 2399.455 kb on + strand, within CA264_10320 at 2399.455 kb on + strand, within CA264_10320 at 2399.456 kb on - strand, within CA264_10320 at 2399.456 kb on - strand, within CA264_10320 at 2399.456 kb on - strand, within CA264_10320 at 2399.457 kb on + strand, within CA264_10320 at 2399.458 kb on - strand, within CA264_10320 at 2399.464 kb on - strand, within CA264_10320 at 2399.617 kb on + strand at 2399.617 kb on + strand at 2399.617 kb on + strand at 2399.646 kb on - strand at 2399.651 kb on + strand at 2399.659 kb on - strand at 2399.773 kb on - strand at 2399.796 kb on + strand at 2399.796 kb on + strand at 2399.797 kb on - strand at 2399.797 kb on - strand at 2399.800 kb on + strand at 2399.800 kb on + strand at 2399.801 kb on - strand at 2399.801 kb on - strand at 2399.801 kb on - strand at 2399.801 kb on - strand at 2399.803 kb on + strand at 2399.804 kb on - strand at 2399.804 kb on - strand at 2399.825 kb on - strand at 2400.105 kb on + strand, within CA264_10325 at 2400.201 kb on + strand at 2400.232 kb on + strand at 2400.236 kb on - strand at 2400.289 kb on + strand at 2400.455 kb on - strand, within CA264_10330 at 2400.488 kb on - strand, within CA264_10330 at 2400.579 kb on + strand, within CA264_10330 at 2400.580 kb on - strand, within CA264_10330 at 2400.631 kb on + strand, within CA264_10330 at 2400.632 kb on - strand, within CA264_10330 at 2400.769 kb on + strand, within CA264_10330 at 2400.775 kb on + strand, within CA264_10330 at 2400.775 kb on + strand, within CA264_10330 at 2400.878 kb on - strand, within CA264_10330 at 2400.921 kb on - strand, within CA264_10330 at 2400.946 kb on + strand, within CA264_10330 at 2401.136 kb on - strand, within CA264_10330 at 2401.143 kb on - strand, within CA264_10330 at 2401.143 kb on - strand, within CA264_10330 at 2401.147 kb on + strand, within CA264_10330 at 2401.148 kb on - strand, within CA264_10330 at 2401.148 kb on - strand, within CA264_10330 at 2401.151 kb on + strand, within CA264_10330 at 2401.186 kb on - strand, within CA264_10330 at 2401.191 kb on - strand, within CA264_10330 at 2401.194 kb on + strand, within CA264_10330 at 2401.195 kb on - strand, within CA264_10330
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 2,398,849 - CA264_10320 0.13 +0.1 2,398,862 - CA264_10320 0.15 +0.4 2,398,914 + CA264_10320 0.21 +0.3 2,398,915 - CA264_10320 0.21 -0.4 2,399,060 - CA264_10320 0.37 -0.5 2,399,139 - CA264_10320 0.46 +0.2 2,399,171 - CA264_10320 0.50 -1.9 2,399,181 + CA264_10320 0.51 +0.5 2,399,238 + CA264_10320 0.57 +0.3 2,399,239 - CA264_10320 0.57 +0.7 2,399,455 + CA264_10320 0.82 -0.3 2,399,455 + CA264_10320 0.82 +0.6 2,399,455 + CA264_10320 0.82 -0.1 2,399,455 + CA264_10320 0.82 -0.7 2,399,455 + CA264_10320 0.82 +0.3 2,399,456 - CA264_10320 0.82 -0.6 2,399,456 - CA264_10320 0.82 -1.0 2,399,456 - CA264_10320 0.82 -0.1 2,399,457 + CA264_10320 0.82 +1.2 2,399,458 - CA264_10320 0.82 +0.1 2,399,464 - CA264_10320 0.83 +0.5 2,399,617 + +0.3 2,399,617 + -0.6 2,399,617 + -0.8 2,399,646 - +0.1 2,399,651 + +0.4 2,399,659 - +0.1 2,399,773 - +0.0 2,399,796 + +0.0 2,399,796 + +0.4 2,399,797 - +0.2 2,399,797 - +0.1 2,399,800 + -0.0 2,399,800 + -0.0 2,399,801 - -0.0 2,399,801 - -0.3 2,399,801 - +0.3 2,399,801 - +0.8 2,399,803 + -0.9 2,399,804 - +0.2 2,399,804 - +0.2 2,399,825 - +0.2 2,400,105 + CA264_10325 0.76 +0.0 2,400,201 + +1.0 2,400,232 + +1.2 2,400,236 - +0.5 2,400,289 + -0.0 2,400,455 - CA264_10330 0.21 -1.0 2,400,488 - CA264_10330 0.24 +0.4 2,400,579 + CA264_10330 0.31 -0.2 2,400,580 - CA264_10330 0.31 -0.5 2,400,631 + CA264_10330 0.35 +0.3 2,400,632 - CA264_10330 0.35 -0.1 2,400,769 + CA264_10330 0.46 -0.3 2,400,775 + CA264_10330 0.47 -0.6 2,400,775 + CA264_10330 0.47 +0.2 2,400,878 - CA264_10330 0.55 -0.1 2,400,921 - CA264_10330 0.59 +0.3 2,400,946 + CA264_10330 0.61 +0.2 2,401,136 - CA264_10330 0.76 -0.3 2,401,143 - CA264_10330 0.76 -0.4 2,401,143 - CA264_10330 0.76 +0.0 2,401,147 + CA264_10330 0.77 -0.2 2,401,148 - CA264_10330 0.77 +2.4 2,401,148 - CA264_10330 0.77 -0.4 2,401,151 + CA264_10330 0.77 +0.1 2,401,186 - CA264_10330 0.80 -0.9 2,401,191 - CA264_10330 0.80 -0.1 2,401,194 + CA264_10330 0.80 -0.2 2,401,195 - CA264_10330 0.80 -0.8
Or see this region's nucleotide sequence