Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08125

Experiment: Ponti_ML7_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08115 and CA264_08120 are separated by 3 nucleotidesCA264_08120 and CA264_08125 are separated by 67 nucleotidesCA264_08125 and CA264_08130 are separated by 314 nucleotidesCA264_08130 and CA264_08135 are separated by 208 nucleotides CA264_08115: CA264_08115 - electron transfer flavoprotein subunit alpha, at 1,872,620 to 1,873,597 _08115 CA264_08120: CA264_08120 - electron transfer flavoprotein subunit alpha, at 1,873,601 to 1,874,341 _08120 CA264_08125: CA264_08125 - tetratricopeptide repeat protein, at 1,874,409 to 1,874,741 _08125 CA264_08130: CA264_08130 - antibiotic biosynthesis monooxygenase, at 1,875,056 to 1,875,352 _08130 CA264_08135: CA264_08135 - pyruvate carboxylase, at 1,875,561 to 1,879,004 _08135 Position (kb) 1874 1875Strain fitness (log2 ratio) -1 0 1 2at 1873.583 kb on + strandat 1873.586 kb on + strandat 1873.589 kb on + strandat 1873.598 kb on - strandat 1873.598 kb on - strandat 1873.598 kb on - strandat 1873.598 kb on - strandat 1873.602 kb on + strandat 1873.602 kb on + strandat 1873.612 kb on + strandat 1873.612 kb on + strandat 1873.628 kb on + strandat 1873.633 kb on + strandat 1873.634 kb on - strandat 1873.699 kb on - strand, within CA264_08120at 1873.703 kb on + strand, within CA264_08120at 1873.704 kb on - strand, within CA264_08120at 1873.708 kb on - strand, within CA264_08120at 1873.894 kb on + strand, within CA264_08120at 1873.964 kb on - strand, within CA264_08120at 1874.015 kb on - strand, within CA264_08120at 1874.019 kb on + strand, within CA264_08120at 1874.019 kb on + strand, within CA264_08120at 1874.020 kb on - strand, within CA264_08120at 1874.044 kb on + strand, within CA264_08120at 1874.162 kb on + strand, within CA264_08120at 1874.166 kb on - strand, within CA264_08120at 1874.240 kb on + strand, within CA264_08120at 1874.241 kb on - strand, within CA264_08120at 1874.285 kb on - strandat 1874.346 kb on - strandat 1874.368 kb on + strandat 1874.390 kb on - strandat 1874.426 kb on - strandat 1874.476 kb on + strand, within CA264_08125at 1874.477 kb on - strand, within CA264_08125at 1874.479 kb on - strand, within CA264_08125at 1874.496 kb on + strand, within CA264_08125at 1874.563 kb on - strand, within CA264_08125at 1874.566 kb on + strand, within CA264_08125at 1874.575 kb on - strand, within CA264_08125at 1874.577 kb on + strand, within CA264_08125at 1874.577 kb on + strand, within CA264_08125at 1874.577 kb on + strand, within CA264_08125at 1874.593 kb on + strand, within CA264_08125at 1874.594 kb on - strand, within CA264_08125at 1874.693 kb on - strand, within CA264_08125at 1874.814 kb on + strandat 1874.842 kb on + strandat 1874.843 kb on - strandat 1874.845 kb on + strandat 1874.898 kb on + strandat 1875.016 kb on - strandat 1875.016 kb on - strandat 1875.016 kb on - strandat 1875.016 kb on - strandat 1875.017 kb on + strandat 1875.017 kb on + strandat 1875.017 kb on + strandat 1875.017 kb on + strandat 1875.018 kb on - strandat 1875.039 kb on + strandat 1875.039 kb on + strandat 1875.049 kb on + strandat 1875.057 kb on + strandat 1875.065 kb on + strandat 1875.067 kb on + strandat 1875.068 kb on - strandat 1875.163 kb on + strand, within CA264_08130at 1875.285 kb on - strand, within CA264_08130at 1875.338 kb on + strandat 1875.338 kb on + strandat 1875.344 kb on + strandat 1875.347 kb on - strandat 1875.417 kb on + strandat 1875.418 kb on - strandat 1875.429 kb on - strandat 1875.429 kb on - strandat 1875.470 kb on + strandat 1875.618 kb on + strandat 1875.618 kb on + strandat 1875.619 kb on - strandat 1875.619 kb on - strandat 1875.619 kb on - strandat 1875.624 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
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1,873,583 + +1.5
1,873,586 + -0.6
1,873,589 + -0.2
1,873,598 - +0.6
1,873,598 - -0.0
1,873,598 - -0.1
1,873,598 - +0.6
1,873,602 + -1.2
1,873,602 + +0.8
1,873,612 + -1.6
1,873,612 + -0.4
1,873,628 + +0.1
1,873,633 + +0.3
1,873,634 - +0.1
1,873,699 - CA264_08120 0.13 +1.1
1,873,703 + CA264_08120 0.14 +0.9
1,873,704 - CA264_08120 0.14 +2.4
1,873,708 - CA264_08120 0.14 +0.6
1,873,894 + CA264_08120 0.40 -1.1
1,873,964 - CA264_08120 0.49 +0.4
1,874,015 - CA264_08120 0.56 +2.0
1,874,019 + CA264_08120 0.56 +1.4
1,874,019 + CA264_08120 0.56 +0.7
1,874,020 - CA264_08120 0.57 +0.7
1,874,044 + CA264_08120 0.60 -0.1
1,874,162 + CA264_08120 0.76 +0.4
1,874,166 - CA264_08120 0.76 +0.9
1,874,240 + CA264_08120 0.86 -0.3
1,874,241 - CA264_08120 0.86 -0.0
1,874,285 - +0.3
1,874,346 - +1.0
1,874,368 + -0.3
1,874,390 - -0.6
1,874,426 - -0.1
1,874,476 + CA264_08125 0.20 -0.6
1,874,477 - CA264_08125 0.20 +0.0
1,874,479 - CA264_08125 0.21 +0.8
1,874,496 + CA264_08125 0.26 -0.2
1,874,563 - CA264_08125 0.46 +0.5
1,874,566 + CA264_08125 0.47 -0.6
1,874,575 - CA264_08125 0.50 +0.4
1,874,577 + CA264_08125 0.50 +0.2
1,874,577 + CA264_08125 0.50 +0.6
1,874,577 + CA264_08125 0.50 +0.6
1,874,593 + CA264_08125 0.55 -0.2
1,874,594 - CA264_08125 0.56 -0.2
1,874,693 - CA264_08125 0.85 -1.1
1,874,814 + -0.3
1,874,842 + +0.4
1,874,843 - +1.4
1,874,845 + -0.5
1,874,898 + -0.8
1,875,016 - -0.0
1,875,016 - +1.9
1,875,016 - -0.1
1,875,016 - +0.0
1,875,017 + -0.2
1,875,017 + -0.4
1,875,017 + +0.2
1,875,017 + -0.8
1,875,018 - -0.3
1,875,039 + +0.6
1,875,039 + +0.8
1,875,049 + +0.4
1,875,057 + -0.4
1,875,065 + +0.2
1,875,067 + -0.2
1,875,068 - +0.9
1,875,163 + CA264_08130 0.36 +0.4
1,875,285 - CA264_08130 0.77 +0.0
1,875,338 + -0.3
1,875,338 + +0.1
1,875,344 + +0.6
1,875,347 - -1.2
1,875,417 + -0.8
1,875,418 - +0.6
1,875,429 - +1.1
1,875,429 - -0.1
1,875,470 + -0.1
1,875,618 + +1.2
1,875,618 + +0.1
1,875,619 - +0.0
1,875,619 - +0.4
1,875,619 - +0.7
1,875,624 + -0.2

Or see this region's nucleotide sequence