Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07880 and CA264_07885 overlap by 4 nucleotides CA264_07885 and CA264_07890 are separated by 105 nucleotides CA264_07890 and CA264_07895 overlap by 4 nucleotides
CA264_07880: CA264_07880 - polysaccharide deacetylase, at 1,824,228 to 1,825,151
_07880
CA264_07885: CA264_07885 - phenazine biosynthesis protein PhzF family protein, at 1,825,148 to 1,826,026
_07885
CA264_07890: CA264_07890 - hypothetical protein, at 1,826,132 to 1,826,725
_07890
CA264_07895: CA264_07895 - hypothetical protein, at 1,826,722 to 1,827,294
_07895
Position (kb)
1825
1826
1827 Strain fitness (log2 ratio)
-2
-1
0
1 at 1824.150 kb on + strand at 1824.197 kb on + strand at 1824.198 kb on - strand at 1824.202 kb on - strand at 1824.228 kb on - strand at 1824.228 kb on - strand at 1824.233 kb on + strand at 1824.233 kb on + strand at 1824.233 kb on + strand at 1824.234 kb on - strand at 1824.367 kb on + strand, within CA264_07880 at 1824.384 kb on - strand, within CA264_07880 at 1824.384 kb on - strand, within CA264_07880 at 1824.430 kb on + strand, within CA264_07880 at 1824.490 kb on - strand, within CA264_07880 at 1824.541 kb on - strand, within CA264_07880 at 1824.541 kb on - strand, within CA264_07880 at 1824.622 kb on + strand, within CA264_07880 at 1824.623 kb on - strand, within CA264_07880 at 1824.630 kb on + strand, within CA264_07880 at 1824.893 kb on - strand, within CA264_07880 at 1824.947 kb on + strand, within CA264_07880 at 1825.150 kb on - strand at 1825.231 kb on + strand at 1825.232 kb on - strand at 1825.237 kb on - strand, within CA264_07885 at 1825.308 kb on + strand, within CA264_07885 at 1825.377 kb on - strand, within CA264_07885 at 1825.443 kb on + strand, within CA264_07885 at 1825.444 kb on - strand, within CA264_07885 at 1825.447 kb on - strand, within CA264_07885 at 1825.796 kb on - strand, within CA264_07885 at 1825.857 kb on - strand, within CA264_07885 at 1826.001 kb on - strand at 1826.035 kb on + strand at 1826.036 kb on - strand at 1826.041 kb on + strand at 1826.042 kb on - strand at 1826.048 kb on + strand at 1826.048 kb on + strand at 1826.281 kb on - strand, within CA264_07890 at 1826.391 kb on + strand, within CA264_07890 at 1826.392 kb on - strand, within CA264_07890 at 1826.399 kb on - strand, within CA264_07890 at 1826.399 kb on - strand, within CA264_07890 at 1826.399 kb on - strand, within CA264_07890 at 1826.399 kb on - strand, within CA264_07890 at 1826.564 kb on + strand, within CA264_07890 at 1826.723 kb on + strand at 1826.728 kb on - strand at 1826.731 kb on - strand at 1826.851 kb on + strand, within CA264_07895 at 1826.852 kb on - strand, within CA264_07895 at 1826.852 kb on - strand, within CA264_07895 at 1826.852 kb on - strand, within CA264_07895 at 1826.919 kb on + strand, within CA264_07895 at 1826.928 kb on + strand, within CA264_07895 at 1826.930 kb on + strand, within CA264_07895 at 1826.931 kb on - strand, within CA264_07895 at 1826.931 kb on - strand, within CA264_07895
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 1,824,150 + +1.0 1,824,197 + -0.2 1,824,198 - +0.5 1,824,202 - -0.6 1,824,228 - -0.1 1,824,228 - -0.9 1,824,233 + -0.7 1,824,233 + -0.2 1,824,233 + +0.4 1,824,234 - -1.5 1,824,367 + CA264_07880 0.15 +0.2 1,824,384 - CA264_07880 0.17 +0.7 1,824,384 - CA264_07880 0.17 -0.2 1,824,430 + CA264_07880 0.22 +0.2 1,824,490 - CA264_07880 0.28 +0.6 1,824,541 - CA264_07880 0.34 +0.4 1,824,541 - CA264_07880 0.34 -0.6 1,824,622 + CA264_07880 0.43 -0.1 1,824,623 - CA264_07880 0.43 -0.2 1,824,630 + CA264_07880 0.44 -1.4 1,824,893 - CA264_07880 0.72 +0.4 1,824,947 + CA264_07880 0.78 +0.4 1,825,150 - -0.3 1,825,231 + +0.5 1,825,232 - +0.3 1,825,237 - CA264_07885 0.10 -0.4 1,825,308 + CA264_07885 0.18 -0.2 1,825,377 - CA264_07885 0.26 -0.2 1,825,443 + CA264_07885 0.34 -0.0 1,825,444 - CA264_07885 0.34 -0.5 1,825,447 - CA264_07885 0.34 -1.8 1,825,796 - CA264_07885 0.74 -0.9 1,825,857 - CA264_07885 0.81 +0.4 1,826,001 - -0.6 1,826,035 + -1.6 1,826,036 - -0.8 1,826,041 + +1.4 1,826,042 - -0.6 1,826,048 + -0.2 1,826,048 + -0.8 1,826,281 - CA264_07890 0.25 -0.4 1,826,391 + CA264_07890 0.44 -0.8 1,826,392 - CA264_07890 0.44 -0.1 1,826,399 - CA264_07890 0.45 -0.6 1,826,399 - CA264_07890 0.45 -1.9 1,826,399 - CA264_07890 0.45 -0.9 1,826,399 - CA264_07890 0.45 -1.9 1,826,564 + CA264_07890 0.73 -0.5 1,826,723 + -0.2 1,826,728 - +0.3 1,826,731 - +0.3 1,826,851 + CA264_07895 0.23 +0.1 1,826,852 - CA264_07895 0.23 -0.7 1,826,852 - CA264_07895 0.23 +0.3 1,826,852 - CA264_07895 0.23 -0.7 1,826,919 + CA264_07895 0.34 -0.1 1,826,928 + CA264_07895 0.36 +0.3 1,826,930 + CA264_07895 0.36 +0.2 1,826,931 - CA264_07895 0.36 -0.2 1,826,931 - CA264_07895 0.36 +0.2
Or see this region's nucleotide sequence