Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07885

Experiment: Ponti_ML7_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07880 and CA264_07885 overlap by 4 nucleotidesCA264_07885 and CA264_07890 are separated by 105 nucleotidesCA264_07890 and CA264_07895 overlap by 4 nucleotides CA264_07880: CA264_07880 - polysaccharide deacetylase, at 1,824,228 to 1,825,151 _07880 CA264_07885: CA264_07885 - phenazine biosynthesis protein PhzF family protein, at 1,825,148 to 1,826,026 _07885 CA264_07890: CA264_07890 - hypothetical protein, at 1,826,132 to 1,826,725 _07890 CA264_07895: CA264_07895 - hypothetical protein, at 1,826,722 to 1,827,294 _07895 Position (kb) 1825 1826 1827Strain fitness (log2 ratio) -2 -1 0 1at 1824.150 kb on + strandat 1824.197 kb on + strandat 1824.198 kb on - strandat 1824.202 kb on - strandat 1824.228 kb on - strandat 1824.228 kb on - strandat 1824.233 kb on + strandat 1824.233 kb on + strandat 1824.233 kb on + strandat 1824.234 kb on - strandat 1824.367 kb on + strand, within CA264_07880at 1824.384 kb on - strand, within CA264_07880at 1824.384 kb on - strand, within CA264_07880at 1824.430 kb on + strand, within CA264_07880at 1824.490 kb on - strand, within CA264_07880at 1824.541 kb on - strand, within CA264_07880at 1824.541 kb on - strand, within CA264_07880at 1824.622 kb on + strand, within CA264_07880at 1824.623 kb on - strand, within CA264_07880at 1824.630 kb on + strand, within CA264_07880at 1824.893 kb on - strand, within CA264_07880at 1824.947 kb on + strand, within CA264_07880at 1825.150 kb on - strandat 1825.231 kb on + strandat 1825.232 kb on - strandat 1825.237 kb on - strand, within CA264_07885at 1825.308 kb on + strand, within CA264_07885at 1825.377 kb on - strand, within CA264_07885at 1825.443 kb on + strand, within CA264_07885at 1825.444 kb on - strand, within CA264_07885at 1825.447 kb on - strand, within CA264_07885at 1825.796 kb on - strand, within CA264_07885at 1825.857 kb on - strand, within CA264_07885at 1826.001 kb on - strandat 1826.035 kb on + strandat 1826.036 kb on - strandat 1826.041 kb on + strandat 1826.042 kb on - strandat 1826.048 kb on + strandat 1826.048 kb on + strandat 1826.281 kb on - strand, within CA264_07890at 1826.391 kb on + strand, within CA264_07890at 1826.392 kb on - strand, within CA264_07890at 1826.399 kb on - strand, within CA264_07890at 1826.399 kb on - strand, within CA264_07890at 1826.399 kb on - strand, within CA264_07890at 1826.399 kb on - strand, within CA264_07890at 1826.564 kb on + strand, within CA264_07890at 1826.723 kb on + strandat 1826.728 kb on - strandat 1826.731 kb on - strandat 1826.851 kb on + strand, within CA264_07895at 1826.852 kb on - strand, within CA264_07895at 1826.852 kb on - strand, within CA264_07895at 1826.852 kb on - strand, within CA264_07895at 1826.919 kb on + strand, within CA264_07895at 1826.928 kb on + strand, within CA264_07895at 1826.930 kb on + strand, within CA264_07895at 1826.931 kb on - strand, within CA264_07895at 1826.931 kb on - strand, within CA264_07895

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Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
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1,824,150 + +1.0
1,824,197 + -0.2
1,824,198 - +0.5
1,824,202 - -0.6
1,824,228 - -0.1
1,824,228 - -0.9
1,824,233 + -0.7
1,824,233 + -0.2
1,824,233 + +0.4
1,824,234 - -1.5
1,824,367 + CA264_07880 0.15 +0.2
1,824,384 - CA264_07880 0.17 +0.7
1,824,384 - CA264_07880 0.17 -0.2
1,824,430 + CA264_07880 0.22 +0.2
1,824,490 - CA264_07880 0.28 +0.6
1,824,541 - CA264_07880 0.34 +0.4
1,824,541 - CA264_07880 0.34 -0.6
1,824,622 + CA264_07880 0.43 -0.1
1,824,623 - CA264_07880 0.43 -0.2
1,824,630 + CA264_07880 0.44 -1.4
1,824,893 - CA264_07880 0.72 +0.4
1,824,947 + CA264_07880 0.78 +0.4
1,825,150 - -0.3
1,825,231 + +0.5
1,825,232 - +0.3
1,825,237 - CA264_07885 0.10 -0.4
1,825,308 + CA264_07885 0.18 -0.2
1,825,377 - CA264_07885 0.26 -0.2
1,825,443 + CA264_07885 0.34 -0.0
1,825,444 - CA264_07885 0.34 -0.5
1,825,447 - CA264_07885 0.34 -1.8
1,825,796 - CA264_07885 0.74 -0.9
1,825,857 - CA264_07885 0.81 +0.4
1,826,001 - -0.6
1,826,035 + -1.6
1,826,036 - -0.8
1,826,041 + +1.4
1,826,042 - -0.6
1,826,048 + -0.2
1,826,048 + -0.8
1,826,281 - CA264_07890 0.25 -0.4
1,826,391 + CA264_07890 0.44 -0.8
1,826,392 - CA264_07890 0.44 -0.1
1,826,399 - CA264_07890 0.45 -0.6
1,826,399 - CA264_07890 0.45 -1.9
1,826,399 - CA264_07890 0.45 -0.9
1,826,399 - CA264_07890 0.45 -1.9
1,826,564 + CA264_07890 0.73 -0.5
1,826,723 + -0.2
1,826,728 - +0.3
1,826,731 - +0.3
1,826,851 + CA264_07895 0.23 +0.1
1,826,852 - CA264_07895 0.23 -0.7
1,826,852 - CA264_07895 0.23 +0.3
1,826,852 - CA264_07895 0.23 -0.7
1,826,919 + CA264_07895 0.34 -0.1
1,826,928 + CA264_07895 0.36 +0.3
1,826,930 + CA264_07895 0.36 +0.2
1,826,931 - CA264_07895 0.36 -0.2
1,826,931 - CA264_07895 0.36 +0.2

Or see this region's nucleotide sequence