Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07805 and CA264_07810 are separated by 231 nucleotides CA264_07810 and CA264_07815 are separated by 159 nucleotides CA264_07815 and CA264_07820 are separated by 127 nucleotides
CA264_07805: CA264_07805 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,807,681 to 1,808,985
_07805
CA264_07810: CA264_07810 - hypothetical protein, at 1,809,217 to 1,809,714
_07810
CA264_07815: CA264_07815 - hypothetical protein, at 1,809,874 to 1,810,335
_07815
CA264_07820: CA264_07820 - hypothetical protein, at 1,810,463 to 1,811,539
_07820
Position (kb)
1809
1810
1811 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1808.983 kb on + strand at 1809.138 kb on - strand at 1809.138 kb on - strand at 1809.264 kb on + strand at 1809.264 kb on + strand at 1809.265 kb on - strand at 1809.270 kb on + strand, within CA264_07810 at 1809.270 kb on + strand, within CA264_07810 at 1809.270 kb on + strand, within CA264_07810 at 1809.270 kb on + strand, within CA264_07810 at 1809.270 kb on + strand, within CA264_07810 at 1809.331 kb on + strand, within CA264_07810 at 1809.331 kb on + strand, within CA264_07810 at 1809.332 kb on - strand, within CA264_07810 at 1809.461 kb on + strand, within CA264_07810 at 1809.469 kb on + strand, within CA264_07810 at 1809.472 kb on - strand, within CA264_07810 at 1809.490 kb on + strand, within CA264_07810 at 1809.490 kb on + strand, within CA264_07810 at 1809.491 kb on - strand, within CA264_07810 at 1809.504 kb on - strand, within CA264_07810 at 1809.525 kb on + strand, within CA264_07810 at 1809.534 kb on - strand, within CA264_07810 at 1809.627 kb on + strand, within CA264_07810 at 1809.628 kb on - strand, within CA264_07810 at 1809.630 kb on + strand, within CA264_07810 at 1809.630 kb on + strand, within CA264_07810 at 1809.651 kb on + strand, within CA264_07810 at 1809.652 kb on - strand, within CA264_07810 at 1809.652 kb on - strand, within CA264_07810 at 1809.735 kb on + strand at 1809.762 kb on - strand at 1809.793 kb on + strand at 1809.823 kb on - strand at 1809.828 kb on - strand at 1809.830 kb on - strand at 1809.830 kb on - strand at 1809.859 kb on - strand at 1809.859 kb on - strand at 1809.859 kb on - strand at 1809.866 kb on - strand at 1809.866 kb on - strand at 1809.867 kb on + strand at 1809.902 kb on + strand at 1809.903 kb on - strand at 1809.919 kb on - strand at 1810.016 kb on - strand, within CA264_07815 at 1810.083 kb on + strand, within CA264_07815 at 1810.087 kb on + strand, within CA264_07815 at 1810.088 kb on - strand, within CA264_07815 at 1810.096 kb on - strand, within CA264_07815 at 1810.107 kb on + strand, within CA264_07815 at 1810.107 kb on + strand, within CA264_07815 at 1810.117 kb on + strand, within CA264_07815 at 1810.117 kb on + strand, within CA264_07815 at 1810.141 kb on - strand, within CA264_07815 at 1810.253 kb on + strand, within CA264_07815 at 1810.269 kb on - strand, within CA264_07815 at 1810.269 kb on - strand, within CA264_07815 at 1810.275 kb on - strand, within CA264_07815 at 1810.329 kb on + strand at 1810.329 kb on + strand at 1810.330 kb on - strand at 1810.330 kb on - strand at 1810.396 kb on + strand at 1810.396 kb on + strand at 1810.397 kb on - strand at 1810.402 kb on - strand at 1810.405 kb on + strand at 1810.406 kb on - strand at 1810.406 kb on - strand at 1810.431 kb on - strand at 1810.453 kb on - strand at 1810.474 kb on + strand at 1810.474 kb on + strand at 1810.483 kb on - strand at 1810.494 kb on + strand at 1810.511 kb on + strand at 1810.537 kb on + strand at 1810.539 kb on + strand at 1810.551 kb on - strand at 1810.585 kb on + strand, within CA264_07820 at 1810.588 kb on - strand, within CA264_07820 at 1810.588 kb on - strand, within CA264_07820 at 1810.741 kb on - strand, within CA264_07820 at 1810.767 kb on - strand, within CA264_07820 at 1810.806 kb on + strand, within CA264_07820 at 1810.809 kb on + strand, within CA264_07820 at 1810.810 kb on - strand, within CA264_07820 at 1810.810 kb on - strand, within CA264_07820 at 1810.815 kb on + strand, within CA264_07820 at 1810.816 kb on - strand, within CA264_07820 at 1810.816 kb on - strand, within CA264_07820 at 1810.816 kb on - strand, within CA264_07820 at 1810.819 kb on + strand, within CA264_07820 at 1810.859 kb on + strand, within CA264_07820 at 1810.860 kb on - strand, within CA264_07820 at 1810.860 kb on - strand, within CA264_07820 at 1810.876 kb on + strand, within CA264_07820 at 1810.886 kb on + strand, within CA264_07820 at 1810.902 kb on + strand, within CA264_07820 at 1810.902 kb on + strand, within CA264_07820 at 1810.903 kb on - strand, within CA264_07820 at 1810.940 kb on + strand, within CA264_07820 at 1810.941 kb on - strand, within CA264_07820 at 1810.955 kb on + strand, within CA264_07820 at 1811.058 kb on + strand, within CA264_07820 at 1811.058 kb on + strand, within CA264_07820 at 1811.059 kb on - strand, within CA264_07820 at 1811.061 kb on + strand, within CA264_07820 at 1811.078 kb on - strand, within CA264_07820 at 1811.088 kb on + strand, within CA264_07820 at 1811.093 kb on + strand, within CA264_07820 at 1811.093 kb on + strand, within CA264_07820 at 1811.093 kb on + strand, within CA264_07820 at 1811.094 kb on - strand, within CA264_07820 at 1811.094 kb on - strand, within CA264_07820 at 1811.108 kb on + strand, within CA264_07820 at 1811.110 kb on + strand, within CA264_07820 at 1811.111 kb on - strand, within CA264_07820 at 1811.144 kb on + strand, within CA264_07820 at 1811.145 kb on - strand, within CA264_07820 at 1811.163 kb on - strand, within CA264_07820 at 1811.167 kb on - strand, within CA264_07820 at 1811.174 kb on + strand, within CA264_07820 at 1811.176 kb on + strand, within CA264_07820 at 1811.266 kb on + strand, within CA264_07820 at 1811.266 kb on + strand, within CA264_07820
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 1,808,983 + -0.4 1,809,138 - -0.1 1,809,138 - -1.0 1,809,264 + +1.0 1,809,264 + -0.4 1,809,265 - +0.6 1,809,270 + CA264_07810 0.11 -0.2 1,809,270 + CA264_07810 0.11 +0.5 1,809,270 + CA264_07810 0.11 +0.1 1,809,270 + CA264_07810 0.11 +0.2 1,809,270 + CA264_07810 0.11 -0.7 1,809,331 + CA264_07810 0.23 -0.8 1,809,331 + CA264_07810 0.23 +0.8 1,809,332 - CA264_07810 0.23 -1.1 1,809,461 + CA264_07810 0.49 +0.2 1,809,469 + CA264_07810 0.51 +0.4 1,809,472 - CA264_07810 0.51 -0.6 1,809,490 + CA264_07810 0.55 -0.1 1,809,490 + CA264_07810 0.55 -0.2 1,809,491 - CA264_07810 0.55 +0.2 1,809,504 - CA264_07810 0.58 -0.6 1,809,525 + CA264_07810 0.62 +0.0 1,809,534 - CA264_07810 0.64 +0.3 1,809,627 + CA264_07810 0.82 +0.0 1,809,628 - CA264_07810 0.83 +0.2 1,809,630 + CA264_07810 0.83 -0.2 1,809,630 + CA264_07810 0.83 -0.4 1,809,651 + CA264_07810 0.87 +0.2 1,809,652 - CA264_07810 0.87 +0.4 1,809,652 - CA264_07810 0.87 -0.1 1,809,735 + -0.6 1,809,762 - +1.4 1,809,793 + +0.1 1,809,823 - -2.1 1,809,828 - -1.0 1,809,830 - +1.0 1,809,830 - -0.3 1,809,859 - -1.0 1,809,859 - -0.1 1,809,859 - +0.1 1,809,866 - +0.3 1,809,866 - -1.1 1,809,867 + -1.2 1,809,902 + -0.2 1,809,903 - +0.3 1,809,919 - -0.3 1,810,016 - CA264_07815 0.31 -0.1 1,810,083 + CA264_07815 0.45 -2.6 1,810,087 + CA264_07815 0.46 +1.0 1,810,088 - CA264_07815 0.46 -0.1 1,810,096 - CA264_07815 0.48 -0.8 1,810,107 + CA264_07815 0.50 +1.0 1,810,107 + CA264_07815 0.50 -0.3 1,810,117 + CA264_07815 0.53 -0.9 1,810,117 + CA264_07815 0.53 +0.3 1,810,141 - CA264_07815 0.58 -0.4 1,810,253 + CA264_07815 0.82 +0.6 1,810,269 - CA264_07815 0.85 -0.7 1,810,269 - CA264_07815 0.85 -0.4 1,810,275 - CA264_07815 0.87 +0.3 1,810,329 + +0.6 1,810,329 + -1.2 1,810,330 - +1.7 1,810,330 - -0.3 1,810,396 + -0.0 1,810,396 + -0.8 1,810,397 - +0.4 1,810,402 - -0.1 1,810,405 + -0.6 1,810,406 - +2.0 1,810,406 - -0.4 1,810,431 - -1.3 1,810,453 - -1.8 1,810,474 + -0.2 1,810,474 + -1.1 1,810,483 - -0.5 1,810,494 + -1.9 1,810,511 + -1.0 1,810,537 + +1.6 1,810,539 + +0.4 1,810,551 - -0.6 1,810,585 + CA264_07820 0.11 -0.1 1,810,588 - CA264_07820 0.12 -0.7 1,810,588 - CA264_07820 0.12 -0.4 1,810,741 - CA264_07820 0.26 -0.5 1,810,767 - CA264_07820 0.28 -0.6 1,810,806 + CA264_07820 0.32 -0.4 1,810,809 + CA264_07820 0.32 +1.6 1,810,810 - CA264_07820 0.32 -0.2 1,810,810 - CA264_07820 0.32 +0.1 1,810,815 + CA264_07820 0.33 +0.0 1,810,816 - CA264_07820 0.33 -0.1 1,810,816 - CA264_07820 0.33 +0.9 1,810,816 - CA264_07820 0.33 +0.4 1,810,819 + CA264_07820 0.33 +0.4 1,810,859 + CA264_07820 0.37 -0.0 1,810,860 - CA264_07820 0.37 +0.3 1,810,860 - CA264_07820 0.37 -0.1 1,810,876 + CA264_07820 0.38 -0.0 1,810,886 + CA264_07820 0.39 +1.0 1,810,902 + CA264_07820 0.41 +0.2 1,810,902 + CA264_07820 0.41 -0.1 1,810,903 - CA264_07820 0.41 +0.9 1,810,940 + CA264_07820 0.44 -0.2 1,810,941 - CA264_07820 0.44 +1.4 1,810,955 + CA264_07820 0.46 +1.1 1,811,058 + CA264_07820 0.55 +0.9 1,811,058 + CA264_07820 0.55 +0.7 1,811,059 - CA264_07820 0.55 -0.3 1,811,061 + CA264_07820 0.56 +0.0 1,811,078 - CA264_07820 0.57 -0.6 1,811,088 + CA264_07820 0.58 +0.7 1,811,093 + CA264_07820 0.58 +0.2 1,811,093 + CA264_07820 0.58 +0.6 1,811,093 + CA264_07820 0.58 +1.7 1,811,094 - CA264_07820 0.59 -0.3 1,811,094 - CA264_07820 0.59 -0.5 1,811,108 + CA264_07820 0.60 -0.6 1,811,110 + CA264_07820 0.60 -0.1 1,811,111 - CA264_07820 0.60 -1.2 1,811,144 + CA264_07820 0.63 +0.2 1,811,145 - CA264_07820 0.63 +0.5 1,811,163 - CA264_07820 0.65 +0.0 1,811,167 - CA264_07820 0.65 +0.4 1,811,174 + CA264_07820 0.66 +1.0 1,811,176 + CA264_07820 0.66 -0.3 1,811,266 + CA264_07820 0.75 +0.3 1,811,266 + CA264_07820 0.75 +0.0
Or see this region's nucleotide sequence