Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06555

Experiment: Ponti_ML7_MIT diversity barseq

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_06550 and CA264_06555 are separated by 268 nucleotidesCA264_06555 and CA264_06560 are separated by 37 nucleotidesCA264_06560 and CA264_06565 are separated by 315 nucleotides CA264_06550: CA264_06550 - hypothetical protein, at 1,511,528 to 1,512,331 _06550 CA264_06555: CA264_06555 - hypothetical protein, at 1,512,600 to 1,513,004 _06555 CA264_06560: CA264_06560 - hypothetical protein, at 1,513,042 to 1,513,437 _06560 CA264_06565: CA264_06565 - hypothetical protein, at 1,513,753 to 1,513,986 _06565 Position (kb) 1512 1513 1514Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1511.608 kb on + strandat 1511.609 kb on - strand, within CA264_06550at 1511.611 kb on - strand, within CA264_06550at 1511.634 kb on + strand, within CA264_06550at 1511.634 kb on + strand, within CA264_06550at 1511.635 kb on - strand, within CA264_06550at 1511.727 kb on + strand, within CA264_06550at 1511.750 kb on + strand, within CA264_06550at 1511.751 kb on - strand, within CA264_06550at 1511.751 kb on - strand, within CA264_06550at 1511.755 kb on - strand, within CA264_06550at 1511.853 kb on + strand, within CA264_06550at 1511.853 kb on + strand, within CA264_06550at 1511.854 kb on - strand, within CA264_06550at 1511.894 kb on - strand, within CA264_06550at 1511.965 kb on + strand, within CA264_06550at 1511.980 kb on + strand, within CA264_06550at 1512.028 kb on + strand, within CA264_06550at 1512.029 kb on - strand, within CA264_06550at 1512.035 kb on + strand, within CA264_06550at 1512.123 kb on + strand, within CA264_06550at 1512.159 kb on + strand, within CA264_06550at 1512.170 kb on + strand, within CA264_06550at 1512.170 kb on + strand, within CA264_06550at 1512.171 kb on - strand, within CA264_06550at 1512.171 kb on - strand, within CA264_06550at 1512.314 kb on + strandat 1512.315 kb on - strandat 1512.320 kb on + strandat 1512.320 kb on + strandat 1512.321 kb on - strandat 1512.321 kb on - strandat 1512.321 kb on - strandat 1512.326 kb on + strandat 1512.326 kb on + strandat 1512.326 kb on + strandat 1512.327 kb on - strandat 1512.327 kb on - strandat 1512.331 kb on + strandat 1512.332 kb on - strandat 1512.361 kb on - strandat 1512.361 kb on - strandat 1512.415 kb on - strandat 1512.420 kb on - strandat 1512.617 kb on - strandat 1512.617 kb on - strandat 1512.625 kb on + strandat 1512.626 kb on - strandat 1512.626 kb on - strandat 1512.858 kb on + strand, within CA264_06555at 1512.859 kb on - strand, within CA264_06555at 1512.864 kb on + strand, within CA264_06555at 1512.970 kb on - strandat 1512.972 kb on + strandat 1512.973 kb on - strandat 1512.973 kb on - strandat 1512.973 kb on - strandat 1512.973 kb on - strandat 1512.974 kb on + strandat 1512.974 kb on + strandat 1512.975 kb on - strandat 1512.983 kb on - strandat 1512.983 kb on - strandat 1513.007 kb on - strandat 1513.023 kb on + strandat 1513.023 kb on + strandat 1513.025 kb on + strandat 1513.025 kb on + strandat 1513.026 kb on - strandat 1513.026 kb on - strandat 1513.029 kb on + strandat 1513.030 kb on - strandat 1513.032 kb on - strandat 1513.032 kb on - strandat 1513.044 kb on - strandat 1513.044 kb on - strandat 1513.075 kb on - strandat 1513.098 kb on - strand, within CA264_06560at 1513.156 kb on + strand, within CA264_06560at 1513.157 kb on - strand, within CA264_06560at 1513.166 kb on - strand, within CA264_06560at 1513.199 kb on + strand, within CA264_06560at 1513.199 kb on + strand, within CA264_06560at 1513.199 kb on + strand, within CA264_06560at 1513.200 kb on - strand, within CA264_06560at 1513.243 kb on + strand, within CA264_06560at 1513.244 kb on - strand, within CA264_06560at 1513.253 kb on - strand, within CA264_06560at 1513.324 kb on + strand, within CA264_06560at 1513.329 kb on - strand, within CA264_06560at 1513.450 kb on + strandat 1513.459 kb on + strandat 1513.621 kb on - strandat 1513.646 kb on + strandat 1513.646 kb on + strandat 1513.647 kb on - strandat 1513.665 kb on - strandat 1513.665 kb on - strandat 1513.665 kb on - strandat 1513.668 kb on + strandat 1513.671 kb on - strandat 1513.675 kb on + strandat 1513.724 kb on + strandat 1513.898 kb on + strand, within CA264_06565at 1513.902 kb on - strand, within CA264_06565at 1513.957 kb on - strand, within CA264_06565at 1513.990 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
remove
1,511,608 + +0.1
1,511,609 - CA264_06550 0.10 -1.5
1,511,611 - CA264_06550 0.10 +0.4
1,511,634 + CA264_06550 0.13 -0.9
1,511,634 + CA264_06550 0.13 +1.1
1,511,635 - CA264_06550 0.13 -0.7
1,511,727 + CA264_06550 0.25 +0.5
1,511,750 + CA264_06550 0.28 -0.3
1,511,751 - CA264_06550 0.28 +0.4
1,511,751 - CA264_06550 0.28 -0.5
1,511,755 - CA264_06550 0.28 +1.3
1,511,853 + CA264_06550 0.40 -0.4
1,511,853 + CA264_06550 0.40 +0.4
1,511,854 - CA264_06550 0.41 -0.1
1,511,894 - CA264_06550 0.46 -2.1
1,511,965 + CA264_06550 0.54 -0.6
1,511,980 + CA264_06550 0.56 -0.0
1,512,028 + CA264_06550 0.62 -1.1
1,512,029 - CA264_06550 0.62 -1.9
1,512,035 + CA264_06550 0.63 +0.3
1,512,123 + CA264_06550 0.74 -2.7
1,512,159 + CA264_06550 0.78 +1.1
1,512,170 + CA264_06550 0.80 -0.2
1,512,170 + CA264_06550 0.80 +0.5
1,512,171 - CA264_06550 0.80 -0.5
1,512,171 - CA264_06550 0.80 +0.1
1,512,314 + -0.4
1,512,315 - +0.6
1,512,320 + +0.3
1,512,320 + -0.9
1,512,321 - -0.7
1,512,321 - -0.6
1,512,321 - +0.3
1,512,326 + +0.8
1,512,326 + -0.3
1,512,326 + +0.0
1,512,327 - +0.9
1,512,327 - -0.7
1,512,331 + -1.1
1,512,332 - +0.7
1,512,361 - -0.0
1,512,361 - +0.1
1,512,415 - -0.6
1,512,420 - -2.7
1,512,617 - -0.3
1,512,617 - +0.5
1,512,625 + +4.3
1,512,626 - +1.4
1,512,626 - +0.7
1,512,858 + CA264_06555 0.64 +3.5
1,512,859 - CA264_06555 0.64 +3.9
1,512,864 + CA264_06555 0.65 +2.8
1,512,970 - +2.8
1,512,972 + +0.5
1,512,973 - +1.6
1,512,973 - +1.6
1,512,973 - +2.3
1,512,973 - +0.5
1,512,974 + +0.9
1,512,974 + +0.5
1,512,975 - -0.0
1,512,983 - +1.5
1,512,983 - -1.1
1,513,007 - +0.3
1,513,023 + -1.1
1,513,023 + +0.1
1,513,025 + +0.5
1,513,025 + +0.3
1,513,026 - -0.2
1,513,026 - -0.9
1,513,029 + -0.3
1,513,030 - +1.6
1,513,032 - -3.1
1,513,032 - -0.3
1,513,044 - -0.3
1,513,044 - +0.2
1,513,075 - -1.9
1,513,098 - CA264_06560 0.14 -0.0
1,513,156 + CA264_06560 0.29 -0.3
1,513,157 - CA264_06560 0.29 -0.1
1,513,166 - CA264_06560 0.31 +0.7
1,513,199 + CA264_06560 0.40 -1.4
1,513,199 + CA264_06560 0.40 -0.7
1,513,199 + CA264_06560 0.40 +0.5
1,513,200 - CA264_06560 0.40 -0.7
1,513,243 + CA264_06560 0.51 +1.5
1,513,244 - CA264_06560 0.51 +0.0
1,513,253 - CA264_06560 0.53 -0.8
1,513,324 + CA264_06560 0.71 -0.6
1,513,329 - CA264_06560 0.72 -0.8
1,513,450 + -1.9
1,513,459 + -0.4
1,513,621 - -0.1
1,513,646 + +0.5
1,513,646 + +0.1
1,513,647 - -0.6
1,513,665 - -1.3
1,513,665 - -0.3
1,513,665 - -1.2
1,513,668 + -1.1
1,513,671 - -0.2
1,513,675 + -0.3
1,513,724 + -0.1
1,513,898 + CA264_06565 0.62 -0.1
1,513,902 - CA264_06565 0.64 -0.2
1,513,957 - CA264_06565 0.87 +0.3
1,513,990 - +0.5

Or see this region's nucleotide sequence