Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06550 and CA264_06555 are separated by 268 nucleotides CA264_06555 and CA264_06560 are separated by 37 nucleotides CA264_06560 and CA264_06565 are separated by 315 nucleotides
CA264_06550: CA264_06550 - hypothetical protein, at 1,511,528 to 1,512,331
_06550
CA264_06555: CA264_06555 - hypothetical protein, at 1,512,600 to 1,513,004
_06555
CA264_06560: CA264_06560 - hypothetical protein, at 1,513,042 to 1,513,437
_06560
CA264_06565: CA264_06565 - hypothetical protein, at 1,513,753 to 1,513,986
_06565
Position (kb)
1512
1513
1514 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1511.608 kb on + strand at 1511.609 kb on - strand, within CA264_06550 at 1511.611 kb on - strand, within CA264_06550 at 1511.634 kb on + strand, within CA264_06550 at 1511.634 kb on + strand, within CA264_06550 at 1511.635 kb on - strand, within CA264_06550 at 1511.727 kb on + strand, within CA264_06550 at 1511.750 kb on + strand, within CA264_06550 at 1511.751 kb on - strand, within CA264_06550 at 1511.751 kb on - strand, within CA264_06550 at 1511.755 kb on - strand, within CA264_06550 at 1511.853 kb on + strand, within CA264_06550 at 1511.853 kb on + strand, within CA264_06550 at 1511.854 kb on - strand, within CA264_06550 at 1511.894 kb on - strand, within CA264_06550 at 1511.965 kb on + strand, within CA264_06550 at 1511.980 kb on + strand, within CA264_06550 at 1512.028 kb on + strand, within CA264_06550 at 1512.029 kb on - strand, within CA264_06550 at 1512.035 kb on + strand, within CA264_06550 at 1512.123 kb on + strand, within CA264_06550 at 1512.159 kb on + strand, within CA264_06550 at 1512.170 kb on + strand, within CA264_06550 at 1512.170 kb on + strand, within CA264_06550 at 1512.171 kb on - strand, within CA264_06550 at 1512.171 kb on - strand, within CA264_06550 at 1512.314 kb on + strand at 1512.315 kb on - strand at 1512.320 kb on + strand at 1512.320 kb on + strand at 1512.321 kb on - strand at 1512.321 kb on - strand at 1512.321 kb on - strand at 1512.326 kb on + strand at 1512.326 kb on + strand at 1512.326 kb on + strand at 1512.327 kb on - strand at 1512.327 kb on - strand at 1512.331 kb on + strand at 1512.332 kb on - strand at 1512.361 kb on - strand at 1512.361 kb on - strand at 1512.415 kb on - strand at 1512.420 kb on - strand at 1512.617 kb on - strand at 1512.617 kb on - strand at 1512.625 kb on + strand at 1512.626 kb on - strand at 1512.626 kb on - strand at 1512.858 kb on + strand, within CA264_06555 at 1512.859 kb on - strand, within CA264_06555 at 1512.864 kb on + strand, within CA264_06555 at 1512.970 kb on - strand at 1512.972 kb on + strand at 1512.973 kb on - strand at 1512.973 kb on - strand at 1512.973 kb on - strand at 1512.973 kb on - strand at 1512.974 kb on + strand at 1512.974 kb on + strand at 1512.975 kb on - strand at 1512.983 kb on - strand at 1512.983 kb on - strand at 1513.007 kb on - strand at 1513.023 kb on + strand at 1513.023 kb on + strand at 1513.025 kb on + strand at 1513.025 kb on + strand at 1513.026 kb on - strand at 1513.026 kb on - strand at 1513.029 kb on + strand at 1513.030 kb on - strand at 1513.032 kb on - strand at 1513.032 kb on - strand at 1513.044 kb on - strand at 1513.044 kb on - strand at 1513.075 kb on - strand at 1513.098 kb on - strand, within CA264_06560 at 1513.156 kb on + strand, within CA264_06560 at 1513.157 kb on - strand, within CA264_06560 at 1513.166 kb on - strand, within CA264_06560 at 1513.199 kb on + strand, within CA264_06560 at 1513.199 kb on + strand, within CA264_06560 at 1513.199 kb on + strand, within CA264_06560 at 1513.200 kb on - strand, within CA264_06560 at 1513.243 kb on + strand, within CA264_06560 at 1513.244 kb on - strand, within CA264_06560 at 1513.253 kb on - strand, within CA264_06560 at 1513.324 kb on + strand, within CA264_06560 at 1513.329 kb on - strand, within CA264_06560 at 1513.450 kb on + strand at 1513.459 kb on + strand at 1513.621 kb on - strand at 1513.646 kb on + strand at 1513.646 kb on + strand at 1513.647 kb on - strand at 1513.665 kb on - strand at 1513.665 kb on - strand at 1513.665 kb on - strand at 1513.668 kb on + strand at 1513.671 kb on - strand at 1513.675 kb on + strand at 1513.724 kb on + strand at 1513.898 kb on + strand, within CA264_06565 at 1513.902 kb on - strand, within CA264_06565 at 1513.957 kb on - strand, within CA264_06565 at 1513.990 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 1,511,608 + +0.1 1,511,609 - CA264_06550 0.10 -1.5 1,511,611 - CA264_06550 0.10 +0.4 1,511,634 + CA264_06550 0.13 -0.9 1,511,634 + CA264_06550 0.13 +1.1 1,511,635 - CA264_06550 0.13 -0.7 1,511,727 + CA264_06550 0.25 +0.5 1,511,750 + CA264_06550 0.28 -0.3 1,511,751 - CA264_06550 0.28 +0.4 1,511,751 - CA264_06550 0.28 -0.5 1,511,755 - CA264_06550 0.28 +1.3 1,511,853 + CA264_06550 0.40 -0.4 1,511,853 + CA264_06550 0.40 +0.4 1,511,854 - CA264_06550 0.41 -0.1 1,511,894 - CA264_06550 0.46 -2.1 1,511,965 + CA264_06550 0.54 -0.6 1,511,980 + CA264_06550 0.56 -0.0 1,512,028 + CA264_06550 0.62 -1.1 1,512,029 - CA264_06550 0.62 -1.9 1,512,035 + CA264_06550 0.63 +0.3 1,512,123 + CA264_06550 0.74 -2.7 1,512,159 + CA264_06550 0.78 +1.1 1,512,170 + CA264_06550 0.80 -0.2 1,512,170 + CA264_06550 0.80 +0.5 1,512,171 - CA264_06550 0.80 -0.5 1,512,171 - CA264_06550 0.80 +0.1 1,512,314 + -0.4 1,512,315 - +0.6 1,512,320 + +0.3 1,512,320 + -0.9 1,512,321 - -0.7 1,512,321 - -0.6 1,512,321 - +0.3 1,512,326 + +0.8 1,512,326 + -0.3 1,512,326 + +0.0 1,512,327 - +0.9 1,512,327 - -0.7 1,512,331 + -1.1 1,512,332 - +0.7 1,512,361 - -0.0 1,512,361 - +0.1 1,512,415 - -0.6 1,512,420 - -2.7 1,512,617 - -0.3 1,512,617 - +0.5 1,512,625 + +4.3 1,512,626 - +1.4 1,512,626 - +0.7 1,512,858 + CA264_06555 0.64 +3.5 1,512,859 - CA264_06555 0.64 +3.9 1,512,864 + CA264_06555 0.65 +2.8 1,512,970 - +2.8 1,512,972 + +0.5 1,512,973 - +1.6 1,512,973 - +1.6 1,512,973 - +2.3 1,512,973 - +0.5 1,512,974 + +0.9 1,512,974 + +0.5 1,512,975 - -0.0 1,512,983 - +1.5 1,512,983 - -1.1 1,513,007 - +0.3 1,513,023 + -1.1 1,513,023 + +0.1 1,513,025 + +0.5 1,513,025 + +0.3 1,513,026 - -0.2 1,513,026 - -0.9 1,513,029 + -0.3 1,513,030 - +1.6 1,513,032 - -3.1 1,513,032 - -0.3 1,513,044 - -0.3 1,513,044 - +0.2 1,513,075 - -1.9 1,513,098 - CA264_06560 0.14 -0.0 1,513,156 + CA264_06560 0.29 -0.3 1,513,157 - CA264_06560 0.29 -0.1 1,513,166 - CA264_06560 0.31 +0.7 1,513,199 + CA264_06560 0.40 -1.4 1,513,199 + CA264_06560 0.40 -0.7 1,513,199 + CA264_06560 0.40 +0.5 1,513,200 - CA264_06560 0.40 -0.7 1,513,243 + CA264_06560 0.51 +1.5 1,513,244 - CA264_06560 0.51 +0.0 1,513,253 - CA264_06560 0.53 -0.8 1,513,324 + CA264_06560 0.71 -0.6 1,513,329 - CA264_06560 0.72 -0.8 1,513,450 + -1.9 1,513,459 + -0.4 1,513,621 - -0.1 1,513,646 + +0.5 1,513,646 + +0.1 1,513,647 - -0.6 1,513,665 - -1.3 1,513,665 - -0.3 1,513,665 - -1.2 1,513,668 + -1.1 1,513,671 - -0.2 1,513,675 + -0.3 1,513,724 + -0.1 1,513,898 + CA264_06565 0.62 -0.1 1,513,902 - CA264_06565 0.64 -0.2 1,513,957 - CA264_06565 0.87 +0.3 1,513,990 - +0.5
Or see this region's nucleotide sequence