Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06120

Experiment: Ponti_ML7_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06110 and CA264_06115 are separated by 165 nucleotidesCA264_06115 and CA264_06120 are separated by 6 nucleotidesCA264_06120 and CA264_06125 are separated by 99 nucleotides CA264_06110: CA264_06110 - hypothetical protein, at 1,427,208 to 1,428,164 _06110 CA264_06115: CA264_06115 - acyl-CoA thioesterase, at 1,428,330 to 1,428,863 _06115 CA264_06120: CA264_06120 - hypothetical protein, at 1,428,870 to 1,429,535 _06120 CA264_06125: CA264_06125 - alkyl hydroperoxide reductase, at 1,429,635 to 1,430,753 _06125 Position (kb) 1428 1429 1430Strain fitness (log2 ratio) -1 0 1 2 3at 1428.000 kb on - strand, within CA264_06110at 1428.028 kb on - strand, within CA264_06110at 1428.030 kb on + strand, within CA264_06110at 1428.031 kb on - strand, within CA264_06110at 1428.060 kb on + strand, within CA264_06110at 1428.060 kb on + strand, within CA264_06110at 1428.117 kb on + strandat 1428.171 kb on + strandat 1428.223 kb on - strandat 1428.238 kb on + strandat 1428.428 kb on + strand, within CA264_06115at 1428.530 kb on + strand, within CA264_06115at 1428.531 kb on - strand, within CA264_06115at 1428.538 kb on + strand, within CA264_06115at 1428.539 kb on - strand, within CA264_06115at 1428.550 kb on + strand, within CA264_06115at 1428.581 kb on + strand, within CA264_06115at 1428.581 kb on + strand, within CA264_06115at 1428.591 kb on - strand, within CA264_06115at 1428.625 kb on + strand, within CA264_06115at 1428.626 kb on - strand, within CA264_06115at 1428.626 kb on - strand, within CA264_06115at 1428.679 kb on + strand, within CA264_06115at 1428.745 kb on + strand, within CA264_06115at 1428.746 kb on - strand, within CA264_06115at 1428.747 kb on + strand, within CA264_06115at 1428.838 kb on - strandat 1428.866 kb on - strandat 1429.538 kb on + strandat 1429.658 kb on + strandat 1429.740 kb on - strandat 1430.030 kb on + strand, within CA264_06125at 1430.100 kb on - strand, within CA264_06125at 1430.101 kb on + strand, within CA264_06125at 1430.101 kb on + strand, within CA264_06125at 1430.451 kb on + strand, within CA264_06125at 1430.452 kb on - strand, within CA264_06125at 1430.452 kb on - strand, within CA264_06125

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Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
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1,428,000 - CA264_06110 0.83 +1.1
1,428,028 - CA264_06110 0.86 +3.3
1,428,030 + CA264_06110 0.86 +0.1
1,428,031 - CA264_06110 0.86 +0.0
1,428,060 + CA264_06110 0.89 -0.1
1,428,060 + CA264_06110 0.89 +0.0
1,428,117 + +0.1
1,428,171 + +1.4
1,428,223 - +0.1
1,428,238 + -0.1
1,428,428 + CA264_06115 0.18 +0.1
1,428,530 + CA264_06115 0.37 -0.7
1,428,531 - CA264_06115 0.38 -0.2
1,428,538 + CA264_06115 0.39 -0.5
1,428,539 - CA264_06115 0.39 -0.0
1,428,550 + CA264_06115 0.41 +0.9
1,428,581 + CA264_06115 0.47 +0.4
1,428,581 + CA264_06115 0.47 +1.1
1,428,591 - CA264_06115 0.49 -0.2
1,428,625 + CA264_06115 0.55 +0.1
1,428,626 - CA264_06115 0.55 +0.0
1,428,626 - CA264_06115 0.55 -0.5
1,428,679 + CA264_06115 0.65 -0.6
1,428,745 + CA264_06115 0.78 -0.2
1,428,746 - CA264_06115 0.78 +0.2
1,428,747 + CA264_06115 0.78 -0.1
1,428,838 - -0.9
1,428,866 - +1.9
1,429,538 + -0.7
1,429,658 + +0.5
1,429,740 - +2.3
1,430,030 + CA264_06125 0.35 +3.2
1,430,100 - CA264_06125 0.42 +0.8
1,430,101 + CA264_06125 0.42 +2.0
1,430,101 + CA264_06125 0.42 +1.7
1,430,451 + CA264_06125 0.73 +2.1
1,430,452 - CA264_06125 0.73 +2.4
1,430,452 - CA264_06125 0.73 +0.5

Or see this region's nucleotide sequence