Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06095 and CA264_06100 are separated by 112 nucleotides CA264_06100 and CA264_06105 are separated by 210 nucleotides CA264_06105 and CA264_06110 are separated by 180 nucleotides
CA264_06095: CA264_06095 - hypothetical protein, at 1,425,155 to 1,425,460
_06095
CA264_06100: CA264_06100 - riboflavin synthase, at 1,425,573 to 1,426,157
_06100
CA264_06105: CA264_06105 - protein-L-isoaspartate O-methyltransferase, at 1,426,368 to 1,427,027
_06105
CA264_06110: CA264_06110 - hypothetical protein, at 1,427,208 to 1,428,164
_06110
Position (kb)
1426
1427
1428 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1425.377 kb on + strand, within CA264_06095 at 1425.463 kb on + strand at 1425.485 kb on + strand at 1425.486 kb on - strand at 1425.494 kb on + strand at 1425.583 kb on - strand at 1425.595 kb on - strand at 1426.157 kb on + strand at 1426.157 kb on + strand at 1426.329 kb on - strand at 1426.329 kb on - strand at 1426.329 kb on - strand at 1426.329 kb on - strand at 1426.334 kb on + strand at 1426.352 kb on + strand at 1426.352 kb on + strand at 1426.353 kb on - strand at 1426.356 kb on + strand at 1426.357 kb on - strand at 1426.357 kb on - strand at 1426.360 kb on + strand at 1426.617 kb on - strand, within CA264_06105 at 1426.674 kb on - strand, within CA264_06105 at 1426.698 kb on + strand, within CA264_06105 at 1426.881 kb on - strand, within CA264_06105 at 1427.025 kb on + strand at 1427.026 kb on - strand at 1427.100 kb on + strand at 1427.120 kb on - strand at 1427.122 kb on - strand at 1427.122 kb on - strand at 1427.167 kb on - strand at 1427.285 kb on + strand at 1427.309 kb on + strand, within CA264_06110 at 1427.400 kb on + strand, within CA264_06110 at 1427.400 kb on + strand, within CA264_06110 at 1427.400 kb on + strand, within CA264_06110 at 1427.401 kb on - strand, within CA264_06110 at 1427.401 kb on - strand, within CA264_06110 at 1427.404 kb on + strand, within CA264_06110 at 1427.500 kb on - strand, within CA264_06110 at 1427.610 kb on + strand, within CA264_06110 at 1427.611 kb on - strand, within CA264_06110 at 1427.665 kb on + strand, within CA264_06110 at 1427.804 kb on + strand, within CA264_06110 at 1427.805 kb on - strand, within CA264_06110 at 1427.834 kb on + strand, within CA264_06110 at 1427.834 kb on + strand, within CA264_06110 at 1428.000 kb on - strand, within CA264_06110
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 1,425,377 + CA264_06095 0.73 +0.5 1,425,463 + +0.2 1,425,485 + -0.7 1,425,486 - -0.3 1,425,494 + -0.5 1,425,583 - -0.4 1,425,595 - -0.9 1,426,157 + +0.8 1,426,157 + -0.1 1,426,329 - -0.3 1,426,329 - -0.7 1,426,329 - +0.0 1,426,329 - +0.1 1,426,334 + -0.8 1,426,352 + -0.7 1,426,352 + -0.1 1,426,353 - +0.0 1,426,356 + -0.3 1,426,357 - -0.1 1,426,357 - -0.2 1,426,360 + -0.1 1,426,617 - CA264_06105 0.38 +1.9 1,426,674 - CA264_06105 0.46 +1.5 1,426,698 + CA264_06105 0.50 +4.2 1,426,881 - CA264_06105 0.78 +2.1 1,427,025 + -0.2 1,427,026 - +0.4 1,427,100 + -0.2 1,427,120 - -0.5 1,427,122 - -0.3 1,427,122 - +1.1 1,427,167 - -3.2 1,427,285 + -1.7 1,427,309 + CA264_06110 0.11 -0.1 1,427,400 + CA264_06110 0.20 +0.7 1,427,400 + CA264_06110 0.20 -0.2 1,427,400 + CA264_06110 0.20 -1.4 1,427,401 - CA264_06110 0.20 -0.3 1,427,401 - CA264_06110 0.20 -0.2 1,427,404 + CA264_06110 0.20 +0.1 1,427,500 - CA264_06110 0.31 +0.1 1,427,610 + CA264_06110 0.42 +0.6 1,427,611 - CA264_06110 0.42 -0.1 1,427,665 + CA264_06110 0.48 +1.8 1,427,804 + CA264_06110 0.62 -0.6 1,427,805 - CA264_06110 0.62 -1.5 1,427,834 + CA264_06110 0.65 +0.1 1,427,834 + CA264_06110 0.65 +0.5 1,428,000 - CA264_06110 0.83 +1.1
Or see this region's nucleotide sequence