Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04390 and CA264_04395 are separated by 8 nucleotides CA264_04395 and CA264_04400 are separated by 3 nucleotides
CA264_04390: CA264_04390 - ABC transporter permease, at 1,016,114 to 1,016,929
_04390
CA264_04395: CA264_04395 - ABC transporter ATP-binding protein, at 1,016,938 to 1,017,711
_04395
CA264_04400: CA264_04400 - ABC transporter permease, at 1,017,715 to 1,018,731
_04400
Position (kb)
1016
1017
1018 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1015.991 kb on + strand at 1015.993 kb on + strand at 1015.996 kb on - strand at 1015.996 kb on - strand at 1015.998 kb on - strand at 1016.021 kb on + strand at 1016.030 kb on - strand at 1016.037 kb on + strand at 1016.071 kb on - strand at 1016.112 kb on + strand at 1016.113 kb on - strand at 1016.121 kb on + strand at 1016.140 kb on + strand at 1016.160 kb on - strand at 1016.285 kb on + strand, within CA264_04390 at 1016.285 kb on + strand, within CA264_04390 at 1016.285 kb on + strand, within CA264_04390 at 1016.286 kb on - strand, within CA264_04390 at 1016.286 kb on - strand, within CA264_04390 at 1016.292 kb on + strand, within CA264_04390 at 1016.423 kb on - strand, within CA264_04390 at 1016.561 kb on - strand, within CA264_04390 at 1016.599 kb on + strand, within CA264_04390 at 1016.600 kb on - strand, within CA264_04390 at 1016.621 kb on + strand, within CA264_04390 at 1016.621 kb on + strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.661 kb on + strand, within CA264_04390 at 1016.661 kb on + strand, within CA264_04390 at 1016.661 kb on + strand, within CA264_04390 at 1016.662 kb on - strand, within CA264_04390 at 1016.662 kb on - strand, within CA264_04390 at 1016.693 kb on + strand, within CA264_04390 at 1016.748 kb on + strand, within CA264_04390 at 1016.770 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.793 kb on - strand, within CA264_04390 at 1016.909 kb on - strand at 1016.909 kb on - strand at 1016.909 kb on - strand at 1016.960 kb on + strand at 1016.960 kb on + strand at 1017.253 kb on - strand, within CA264_04395 at 1017.372 kb on - strand, within CA264_04395 at 1017.430 kb on - strand at 1017.460 kb on + strand, within CA264_04395 at 1017.460 kb on + strand, within CA264_04395 at 1017.460 kb on + strand, within CA264_04395 at 1017.461 kb on - strand, within CA264_04395 at 1017.461 kb on - strand, within CA264_04395 at 1017.558 kb on + strand, within CA264_04395 at 1017.574 kb on - strand, within CA264_04395 at 1017.658 kb on - strand at 1017.695 kb on - strand at 1017.705 kb on - strand at 1017.709 kb on + strand at 1017.709 kb on + strand at 1017.709 kb on + strand at 1017.710 kb on - strand at 1017.710 kb on - strand at 1017.710 kb on - strand at 1017.713 kb on + strand at 1017.741 kb on + strand at 1017.741 kb on + strand at 1017.742 kb on - strand at 1017.742 kb on - strand at 1017.742 kb on - strand at 1017.743 kb on + strand at 1017.779 kb on + strand at 1017.779 kb on + strand at 1017.798 kb on - strand at 1017.825 kb on + strand, within CA264_04400 at 1017.826 kb on - strand, within CA264_04400 at 1017.838 kb on - strand, within CA264_04400 at 1017.971 kb on + strand, within CA264_04400 at 1017.972 kb on - strand, within CA264_04400 at 1017.972 kb on - strand, within CA264_04400 at 1017.991 kb on + strand, within CA264_04400 at 1017.991 kb on + strand, within CA264_04400 at 1018.042 kb on - strand, within CA264_04400 at 1018.203 kb on - strand, within CA264_04400 at 1018.347 kb on + strand, within CA264_04400 at 1018.362 kb on + strand, within CA264_04400 at 1018.363 kb on - strand, within CA264_04400 at 1018.402 kb on - strand, within CA264_04400 at 1018.530 kb on - strand, within CA264_04400
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 1,015,991 + +0.0 1,015,993 + +0.2 1,015,996 - +0.0 1,015,996 - -0.2 1,015,998 - -0.1 1,016,021 + +0.2 1,016,030 - -1.1 1,016,037 + +0.4 1,016,071 - -0.1 1,016,112 + +0.4 1,016,113 - -0.2 1,016,121 + +0.8 1,016,140 + -0.0 1,016,160 - -0.5 1,016,285 + CA264_04390 0.21 +0.3 1,016,285 + CA264_04390 0.21 +1.2 1,016,285 + CA264_04390 0.21 -0.2 1,016,286 - CA264_04390 0.21 +0.5 1,016,286 - CA264_04390 0.21 -0.4 1,016,292 + CA264_04390 0.22 -1.1 1,016,423 - CA264_04390 0.38 +1.5 1,016,561 - CA264_04390 0.55 +0.6 1,016,599 + CA264_04390 0.59 +0.1 1,016,600 - CA264_04390 0.60 +0.5 1,016,621 + CA264_04390 0.62 -0.7 1,016,621 + CA264_04390 0.62 -0.5 1,016,622 - CA264_04390 0.62 +0.2 1,016,622 - CA264_04390 0.62 +0.8 1,016,622 - CA264_04390 0.62 +0.1 1,016,622 - CA264_04390 0.62 +1.1 1,016,622 - CA264_04390 0.62 +2.2 1,016,661 + CA264_04390 0.67 +0.8 1,016,661 + CA264_04390 0.67 -0.0 1,016,661 + CA264_04390 0.67 -0.2 1,016,662 - CA264_04390 0.67 +1.2 1,016,662 - CA264_04390 0.67 -0.7 1,016,693 + CA264_04390 0.71 +0.1 1,016,748 + CA264_04390 0.78 +1.2 1,016,770 + CA264_04390 0.80 +2.1 1,016,792 + CA264_04390 0.83 +0.2 1,016,792 + CA264_04390 0.83 -0.5 1,016,792 + CA264_04390 0.83 +0.1 1,016,792 + CA264_04390 0.83 -0.2 1,016,793 - CA264_04390 0.83 -0.1 1,016,909 - +0.1 1,016,909 - -0.0 1,016,909 - +0.2 1,016,960 + +0.7 1,016,960 + +0.0 1,017,253 - CA264_04395 0.41 -0.1 1,017,372 - CA264_04395 0.56 +0.6 1,017,430 - -3.0 1,017,460 + CA264_04395 0.67 +1.2 1,017,460 + CA264_04395 0.67 +2.1 1,017,460 + CA264_04395 0.67 +2.4 1,017,461 - CA264_04395 0.68 -0.8 1,017,461 - CA264_04395 0.68 -1.0 1,017,558 + CA264_04395 0.80 +1.5 1,017,574 - CA264_04395 0.82 -0.8 1,017,658 - -0.1 1,017,695 - -0.3 1,017,705 - +0.5 1,017,709 + +0.5 1,017,709 + -0.9 1,017,709 + +0.1 1,017,710 - -0.2 1,017,710 - +0.1 1,017,710 - +0.5 1,017,713 + +1.0 1,017,741 + -0.5 1,017,741 + -1.3 1,017,742 - +0.4 1,017,742 - -0.2 1,017,742 - -0.5 1,017,743 + +0.3 1,017,779 + +0.5 1,017,779 + +0.6 1,017,798 - +0.8 1,017,825 + CA264_04400 0.11 +1.3 1,017,826 - CA264_04400 0.11 +1.4 1,017,838 - CA264_04400 0.12 -0.5 1,017,971 + CA264_04400 0.25 -0.3 1,017,972 - CA264_04400 0.25 -0.1 1,017,972 - CA264_04400 0.25 -0.3 1,017,991 + CA264_04400 0.27 -0.1 1,017,991 + CA264_04400 0.27 +0.5 1,018,042 - CA264_04400 0.32 +0.3 1,018,203 - CA264_04400 0.48 +0.2 1,018,347 + CA264_04400 0.62 +0.3 1,018,362 + CA264_04400 0.64 +0.5 1,018,363 - CA264_04400 0.64 -0.3 1,018,402 - CA264_04400 0.68 -1.2 1,018,530 - CA264_04400 0.80 +0.3
Or see this region's nucleotide sequence