Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03860

Experiment: Ponti_ML7_MIT diversity barseq

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03855 and CA264_03860 are separated by 6 nucleotidesCA264_03860 and CA264_03865 are separated by 6 nucleotides CA264_03855: CA264_03855 - magnesium transporter, at 899,363 to 900,715 _03855 CA264_03860: CA264_03860 - hypothetical protein, at 900,722 to 901,252 _03860 CA264_03865: CA264_03865 - phosphoglycerate dehydrogenase, at 901,259 to 902,215 _03865 Position (kb) 900 901 902Strain fitness (log2 ratio) -2 -1 0 1 2 3at 899.753 kb on + strand, within CA264_03855at 899.797 kb on + strand, within CA264_03855at 899.798 kb on - strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.972 kb on + strand, within CA264_03855at 899.972 kb on + strand, within CA264_03855at 899.986 kb on + strand, within CA264_03855at 899.986 kb on + strand, within CA264_03855at 899.987 kb on - strand, within CA264_03855at 900.002 kb on + strand, within CA264_03855at 900.002 kb on + strand, within CA264_03855at 900.002 kb on + strand, within CA264_03855at 900.003 kb on - strand, within CA264_03855at 900.072 kb on + strand, within CA264_03855at 900.073 kb on - strand, within CA264_03855at 900.073 kb on - strand, within CA264_03855at 900.163 kb on + strand, within CA264_03855at 900.163 kb on + strand, within CA264_03855at 900.220 kb on - strand, within CA264_03855at 900.351 kb on + strand, within CA264_03855at 900.352 kb on - strand, within CA264_03855at 900.352 kb on - strand, within CA264_03855at 900.497 kb on + strand, within CA264_03855at 900.498 kb on - strand, within CA264_03855at 900.617 kb on - strandat 900.643 kb on + strandat 900.644 kb on - strandat 900.646 kb on + strandat 900.680 kb on + strandat 900.751 kb on + strandat 900.751 kb on + strandat 900.754 kb on + strandat 900.755 kb on - strandat 900.798 kb on + strand, within CA264_03860at 900.819 kb on + strand, within CA264_03860at 900.820 kb on - strand, within CA264_03860at 900.825 kb on + strand, within CA264_03860at 900.825 kb on + strand, within CA264_03860at 900.825 kb on + strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.828 kb on + strand, within CA264_03860at 900.829 kb on - strand, within CA264_03860at 900.829 kb on - strand, within CA264_03860at 900.846 kb on - strand, within CA264_03860at 900.884 kb on + strand, within CA264_03860at 900.885 kb on - strand, within CA264_03860at 900.899 kb on + strand, within CA264_03860at 900.900 kb on - strand, within CA264_03860at 900.903 kb on + strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.908 kb on - strand, within CA264_03860at 900.944 kb on + strand, within CA264_03860at 900.945 kb on - strand, within CA264_03860at 901.005 kb on + strand, within CA264_03860at 901.005 kb on + strand, within CA264_03860at 901.027 kb on + strand, within CA264_03860at 901.028 kb on - strand, within CA264_03860at 901.061 kb on + strand, within CA264_03860at 901.061 kb on + strand, within CA264_03860at 901.061 kb on + strand, within CA264_03860at 901.130 kb on + strand, within CA264_03860at 901.131 kb on - strand, within CA264_03860at 901.218 kb on + strandat 901.219 kb on - strandat 901.223 kb on + strandat 901.223 kb on + strandat 901.224 kb on - strandat 901.224 kb on - strandat 901.224 kb on - strandat 901.225 kb on + strandat 901.225 kb on + strandat 901.225 kb on + strandat 901.246 kb on - strandat 902.193 kb on + strandat 902.213 kb on + strandat 902.213 kb on + strandat 902.213 kb on + strandat 902.214 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
remove
899,753 + CA264_03855 0.29 -0.1
899,797 + CA264_03855 0.32 +0.5
899,798 - CA264_03855 0.32 -0.5
899,882 + CA264_03855 0.38 -1.8
899,882 + CA264_03855 0.38 +0.4
899,882 + CA264_03855 0.38 -0.3
899,882 + CA264_03855 0.38 +0.5
899,883 - CA264_03855 0.38 +0.8
899,883 - CA264_03855 0.38 +0.1
899,883 - CA264_03855 0.38 -0.3
899,883 - CA264_03855 0.38 -0.1
899,972 + CA264_03855 0.45 +3.3
899,972 + CA264_03855 0.45 +1.2
899,986 + CA264_03855 0.46 +1.5
899,986 + CA264_03855 0.46 +0.3
899,987 - CA264_03855 0.46 +0.4
900,002 + CA264_03855 0.47 +0.2
900,002 + CA264_03855 0.47 -2.3
900,002 + CA264_03855 0.47 +0.4
900,003 - CA264_03855 0.47 -0.2
900,072 + CA264_03855 0.52 -0.3
900,073 - CA264_03855 0.52 +0.6
900,073 - CA264_03855 0.52 +0.2
900,163 + CA264_03855 0.59 +0.7
900,163 + CA264_03855 0.59 +0.6
900,220 - CA264_03855 0.63 +0.2
900,351 + CA264_03855 0.73 -0.5
900,352 - CA264_03855 0.73 -2.5
900,352 - CA264_03855 0.73 +0.0
900,497 + CA264_03855 0.84 -0.5
900,498 - CA264_03855 0.84 +0.4
900,617 - -0.1
900,643 + +1.4
900,644 - -0.2
900,646 + +0.5
900,680 + +2.8
900,751 + +0.1
900,751 + -1.1
900,754 + +0.5
900,755 - +0.2
900,798 + CA264_03860 0.14 -1.4
900,819 + CA264_03860 0.18 -0.3
900,820 - CA264_03860 0.18 -0.7
900,825 + CA264_03860 0.19 -0.2
900,825 + CA264_03860 0.19 +0.1
900,825 + CA264_03860 0.19 +0.2
900,826 - CA264_03860 0.20 +0.1
900,826 - CA264_03860 0.20 +0.1
900,826 - CA264_03860 0.20 +0.5
900,826 - CA264_03860 0.20 -0.9
900,828 + CA264_03860 0.20 +0.2
900,829 - CA264_03860 0.20 +1.1
900,829 - CA264_03860 0.20 -0.0
900,846 - CA264_03860 0.23 +0.1
900,884 + CA264_03860 0.31 +0.5
900,885 - CA264_03860 0.31 -0.6
900,899 + CA264_03860 0.33 +1.0
900,900 - CA264_03860 0.34 -0.0
900,903 + CA264_03860 0.34 +0.2
900,904 - CA264_03860 0.34 -1.0
900,904 - CA264_03860 0.34 +1.9
900,904 - CA264_03860 0.34 +0.1
900,904 - CA264_03860 0.34 -0.7
900,907 + CA264_03860 0.35 -0.8
900,907 + CA264_03860 0.35 +0.2
900,907 + CA264_03860 0.35 -0.4
900,907 + CA264_03860 0.35 -0.5
900,908 - CA264_03860 0.35 +0.4
900,944 + CA264_03860 0.42 +0.5
900,945 - CA264_03860 0.42 +0.6
901,005 + CA264_03860 0.53 -1.6
901,005 + CA264_03860 0.53 +0.6
901,027 + CA264_03860 0.57 -0.5
901,028 - CA264_03860 0.58 -0.2
901,061 + CA264_03860 0.64 -0.1
901,061 + CA264_03860 0.64 -2.1
901,061 + CA264_03860 0.64 -1.1
901,130 + CA264_03860 0.77 +0.2
901,131 - CA264_03860 0.77 -0.5
901,218 + +1.3
901,219 - -0.1
901,223 + -0.3
901,223 + -0.1
901,224 - +2.5
901,224 - -0.3
901,224 - +1.2
901,225 + -0.1
901,225 + -0.7
901,225 + +0.9
901,246 - +0.8
902,193 + +0.7
902,213 + -0.3
902,213 + +1.1
902,213 + +0.5
902,214 - -1.3

Or see this region's nucleotide sequence