Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03550 and CA264_03555 are separated by 187 nucleotides CA264_03555 and CA264_03560 are separated by 370 nucleotides CA264_03560 and CA264_03565 are separated by 271 nucleotides
CA264_03550: CA264_03550 - hypothetical protein, at 827,686 to 828,303
_03550
CA264_03555: CA264_03555 - hypothetical protein, at 828,491 to 828,916
_03555
CA264_03560: CA264_03560 - hypothetical protein, at 829,287 to 829,616
_03560
CA264_03565: CA264_03565 - transposase, at 829,888 to 830,433
_03565
Position (kb) 829
830 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 828.301 kb on + strand at 828.302 kb on - strand at 828.307 kb on + strand at 828.308 kb on - strand at 828.324 kb on + strand at 828.324 kb on + strand at 828.325 kb on - strand at 828.328 kb on + strand at 828.329 kb on - strand at 828.364 kb on - strand at 828.371 kb on - strand at 828.406 kb on + strand at 828.467 kb on + strand at 828.468 kb on - strand at 828.469 kb on + strand at 828.469 kb on + strand at 828.470 kb on - strand at 828.494 kb on + strand at 828.496 kb on + strand at 828.497 kb on - strand at 828.497 kb on - strand at 828.512 kb on - strand at 828.540 kb on + strand, within CA264_03555 at 828.541 kb on - strand, within CA264_03555 at 828.541 kb on - strand, within CA264_03555 at 828.544 kb on + strand, within CA264_03555 at 828.545 kb on - strand, within CA264_03555 at 828.545 kb on - strand, within CA264_03555 at 828.558 kb on + strand, within CA264_03555 at 828.558 kb on + strand, within CA264_03555 at 828.558 kb on + strand, within CA264_03555 at 828.559 kb on - strand, within CA264_03555 at 828.565 kb on + strand, within CA264_03555 at 828.566 kb on - strand, within CA264_03555 at 828.566 kb on - strand, within CA264_03555 at 828.600 kb on - strand, within CA264_03555 at 828.603 kb on + strand, within CA264_03555 at 828.604 kb on - strand, within CA264_03555 at 828.687 kb on - strand, within CA264_03555 at 828.710 kb on + strand, within CA264_03555 at 828.711 kb on - strand, within CA264_03555 at 828.787 kb on + strand, within CA264_03555 at 828.819 kb on - strand, within CA264_03555 at 828.819 kb on - strand, within CA264_03555 at 828.832 kb on - strand, within CA264_03555 at 828.871 kb on - strand, within CA264_03555 at 828.871 kb on - strand, within CA264_03555 at 828.871 kb on - strand, within CA264_03555 at 828.876 kb on - strand at 828.945 kb on - strand at 828.951 kb on + strand at 829.028 kb on - strand at 829.047 kb on + strand at 829.055 kb on + strand at 829.055 kb on + strand at 829.119 kb on + strand at 829.119 kb on + strand at 829.120 kb on - strand at 829.120 kb on - strand at 829.123 kb on - strand at 829.123 kb on - strand at 829.123 kb on - strand at 829.146 kb on + strand at 829.164 kb on + strand at 829.164 kb on + strand at 829.164 kb on + strand at 829.165 kb on - strand at 829.191 kb on + strand at 829.192 kb on - strand at 829.225 kb on + strand at 829.266 kb on - strand at 829.267 kb on + strand at 829.268 kb on - strand at 829.268 kb on - strand at 829.274 kb on - strand at 829.286 kb on - strand at 829.305 kb on + strand at 829.312 kb on + strand at 829.402 kb on + strand, within CA264_03560 at 829.409 kb on + strand, within CA264_03560 at 829.445 kb on - strand, within CA264_03560 at 829.445 kb on - strand, within CA264_03560 at 829.483 kb on + strand, within CA264_03560 at 829.483 kb on + strand, within CA264_03560 at 829.484 kb on - strand, within CA264_03560 at 829.516 kb on + strand, within CA264_03560 at 829.517 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.595 kb on - strand at 829.603 kb on + strand at 829.604 kb on - strand at 829.615 kb on - strand at 829.750 kb on + strand at 829.750 kb on + strand at 829.754 kb on + strand at 829.754 kb on + strand at 829.755 kb on - strand at 829.769 kb on + strand at 829.775 kb on + strand at 829.811 kb on - strand at 829.829 kb on + strand at 829.830 kb on - strand at 829.830 kb on - strand at 829.830 kb on - strand at 829.835 kb on - strand at 829.835 kb on - strand at 829.871 kb on + strand at 829.884 kb on + strand at 829.885 kb on - strand at 829.885 kb on - strand at 829.885 kb on - strand at 829.885 kb on - strand at 829.926 kb on + strand at 829.926 kb on + strand at 829.947 kb on - strand, within CA264_03565 at 830.046 kb on + strand, within CA264_03565 at 830.047 kb on - strand, within CA264_03565 at 830.047 kb on - strand, within CA264_03565 at 830.187 kb on + strand, within CA264_03565 at 830.190 kb on - strand, within CA264_03565 at 830.190 kb on - strand, within CA264_03565 at 830.279 kb on + strand, within CA264_03565 at 830.279 kb on + strand, within CA264_03565 at 830.280 kb on - strand, within CA264_03565 at 830.280 kb on - strand, within CA264_03565 at 830.280 kb on - strand, within CA264_03565 at 830.309 kb on + strand, within CA264_03565 at 830.326 kb on - strand, within CA264_03565 at 830.326 kb on - strand, within CA264_03565 at 830.329 kb on + strand, within CA264_03565 at 830.369 kb on + strand, within CA264_03565 at 830.393 kb on + strand at 830.393 kb on + strand at 830.394 kb on - strand at 830.421 kb on - strand at 830.436 kb on - strand at 830.436 kb on - strand at 830.444 kb on - strand at 830.444 kb on - strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.449 kb on - strand at 830.450 kb on + strand at 830.451 kb on - strand at 830.452 kb on + strand at 830.453 kb on - strand at 830.453 kb on - strand at 830.496 kb on - strand at 830.505 kb on - strand at 830.505 kb on - strand at 830.505 kb on - strand at 830.521 kb on - strand at 830.541 kb on - strand at 830.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 828,301 + +0.4 828,302 - +0.2 828,307 + +0.1 828,308 - -0.1 828,324 + -0.3 828,324 + -1.5 828,325 - -0.4 828,328 + +0.5 828,329 - +2.2 828,364 - -0.1 828,371 - -0.4 828,406 + +2.6 828,467 + -0.8 828,468 - +0.5 828,469 + -1.0 828,469 + +1.1 828,470 - -0.5 828,494 + -0.1 828,496 + +0.1 828,497 - -0.5 828,497 - +0.5 828,512 - +0.3 828,540 + CA264_03555 0.12 +1.6 828,541 - CA264_03555 0.12 +0.0 828,541 - CA264_03555 0.12 -0.2 828,544 + CA264_03555 0.12 +0.4 828,545 - CA264_03555 0.13 -0.7 828,545 - CA264_03555 0.13 -0.2 828,558 + CA264_03555 0.16 +1.8 828,558 + CA264_03555 0.16 -0.7 828,558 + CA264_03555 0.16 +0.7 828,559 - CA264_03555 0.16 -0.1 828,565 + CA264_03555 0.17 +0.6 828,566 - CA264_03555 0.18 +0.4 828,566 - CA264_03555 0.18 +0.1 828,600 - CA264_03555 0.26 +0.5 828,603 + CA264_03555 0.26 -0.3 828,604 - CA264_03555 0.27 -1.2 828,687 - CA264_03555 0.46 +0.8 828,710 + CA264_03555 0.51 +0.7 828,711 - CA264_03555 0.52 -2.1 828,787 + CA264_03555 0.69 -0.5 828,819 - CA264_03555 0.77 -0.8 828,819 - CA264_03555 0.77 -0.4 828,832 - CA264_03555 0.80 -1.2 828,871 - CA264_03555 0.89 +0.4 828,871 - CA264_03555 0.89 -0.3 828,871 - CA264_03555 0.89 -0.5 828,876 - -0.6 828,945 - +0.7 828,951 + +0.3 829,028 - +2.1 829,047 + +0.5 829,055 + -1.0 829,055 + +1.1 829,119 + +0.1 829,119 + -0.0 829,120 - +0.6 829,120 - -0.8 829,123 - +1.3 829,123 - -2.5 829,123 - -1.5 829,146 + +0.3 829,164 + -0.9 829,164 + -0.8 829,164 + -0.2 829,165 - -0.3 829,191 + +0.8 829,192 - +1.5 829,225 + +0.5 829,266 - -0.7 829,267 + +0.1 829,268 - -0.1 829,268 - -0.6 829,274 - -0.2 829,286 - +0.5 829,305 + +0.1 829,312 + -0.4 829,402 + CA264_03560 0.35 +0.5 829,409 + CA264_03560 0.37 -0.5 829,445 - CA264_03560 0.48 -0.2 829,445 - CA264_03560 0.48 -0.5 829,483 + CA264_03560 0.59 -0.3 829,483 + CA264_03560 0.59 -0.2 829,484 - CA264_03560 0.60 -0.5 829,516 + CA264_03560 0.69 -1.1 829,517 - CA264_03560 0.70 -0.5 829,580 - CA264_03560 0.89 -0.4 829,580 - CA264_03560 0.89 -0.0 829,580 - CA264_03560 0.89 -0.6 829,580 - CA264_03560 0.89 -0.7 829,580 - CA264_03560 0.89 -0.2 829,595 - +0.3 829,603 + -1.8 829,604 - -0.7 829,615 - +0.1 829,750 + +0.0 829,750 + -0.6 829,754 + -0.8 829,754 + +0.9 829,755 - +0.0 829,769 + +0.1 829,775 + -0.4 829,811 - -1.3 829,829 + -0.7 829,830 - -1.5 829,830 - -0.0 829,830 - -0.3 829,835 - -0.2 829,835 - +1.5 829,871 + -0.7 829,884 + -0.5 829,885 - -0.6 829,885 - +0.4 829,885 - -1.5 829,885 - -0.4 829,926 + -0.5 829,926 + -0.5 829,947 - CA264_03565 0.11 +1.8 830,046 + CA264_03565 0.29 -0.3 830,047 - CA264_03565 0.29 +1.8 830,047 - CA264_03565 0.29 -0.1 830,187 + CA264_03565 0.55 -0.3 830,190 - CA264_03565 0.55 -0.4 830,190 - CA264_03565 0.55 +0.5 830,279 + CA264_03565 0.72 +0.1 830,279 + CA264_03565 0.72 -0.1 830,280 - CA264_03565 0.72 +0.3 830,280 - CA264_03565 0.72 +0.0 830,280 - CA264_03565 0.72 -0.4 830,309 + CA264_03565 0.77 -0.8 830,326 - CA264_03565 0.80 -0.9 830,326 - CA264_03565 0.80 +0.1 830,329 + CA264_03565 0.81 -0.5 830,369 + CA264_03565 0.88 +0.2 830,393 + -0.3 830,393 + +0.1 830,394 - -0.5 830,421 - -0.0 830,436 - +0.8 830,436 - -0.3 830,444 - -0.5 830,444 - -0.5 830,448 + +1.1 830,448 + +0.5 830,448 + +0.2 830,448 + +0.5 830,448 + +0.1 830,448 + +1.5 830,449 - +0.2 830,450 + +2.8 830,451 - +0.2 830,452 + +1.5 830,453 - +0.0 830,453 - -0.2 830,496 - +0.8 830,505 - +0.3 830,505 - -0.3 830,505 - +0.1 830,521 - +0.2 830,541 - -1.0 830,562 - +0.8
Or see this region's nucleotide sequence