Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03460 and CA264_03465 are separated by 82 nucleotides CA264_03465 and CA264_03470 are separated by 303 nucleotides CA264_03470 and CA264_03475 are separated by 349 nucleotides
CA264_03460: CA264_03460 - hypothetical protein, at 808,079 to 808,501
_03460
CA264_03465: CA264_03465 - hypothetical protein, at 808,584 to 809,066
_03465
CA264_03470: CA264_03470 - short-chain dehydrogenase, at 809,370 to 810,140
_03470
CA264_03475: CA264_03475 - oxidoreductase, at 810,490 to 811,362
_03475
Position (kb) 809
810
811 Strain fitness (log2 ratio) -2
-1
0
1
2 at 808.380 kb on + strand, within CA264_03460 at 808.380 kb on + strand, within CA264_03460 at 808.389 kb on - strand, within CA264_03460 at 808.439 kb on + strand, within CA264_03460 at 808.515 kb on - strand at 808.515 kb on - strand at 808.523 kb on + strand at 808.524 kb on - strand at 808.524 kb on - strand at 808.551 kb on + strand at 808.551 kb on + strand at 808.644 kb on + strand, within CA264_03465 at 808.645 kb on - strand, within CA264_03465 at 808.659 kb on - strand, within CA264_03465 at 808.706 kb on - strand, within CA264_03465 at 808.762 kb on - strand, within CA264_03465 at 808.817 kb on + strand, within CA264_03465 at 808.818 kb on - strand, within CA264_03465 at 808.821 kb on + strand, within CA264_03465 at 808.855 kb on + strand, within CA264_03465 at 808.956 kb on - strand, within CA264_03465 at 808.985 kb on + strand, within CA264_03465 at 809.068 kb on + strand at 809.068 kb on + strand at 809.069 kb on - strand at 809.072 kb on + strand at 809.072 kb on + strand at 809.190 kb on + strand at 809.215 kb on + strand at 809.305 kb on + strand at 809.316 kb on + strand at 809.316 kb on + strand at 809.338 kb on + strand at 809.383 kb on + strand at 809.401 kb on + strand at 809.589 kb on + strand, within CA264_03470 at 809.605 kb on + strand, within CA264_03470 at 809.683 kb on - strand, within CA264_03470 at 809.709 kb on + strand, within CA264_03470 at 809.710 kb on - strand, within CA264_03470 at 809.765 kb on - strand, within CA264_03470 at 809.904 kb on + strand, within CA264_03470 at 810.126 kb on + strand at 810.161 kb on + strand at 810.164 kb on + strand at 810.165 kb on - strand at 810.165 kb on - strand at 810.169 kb on + strand at 810.169 kb on + strand at 810.170 kb on - strand at 810.170 kb on - strand at 810.276 kb on - strand at 810.297 kb on + strand at 810.298 kb on - strand at 810.298 kb on - strand at 810.316 kb on - strand at 810.316 kb on - strand at 810.423 kb on + strand at 810.423 kb on + strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.427 kb on + strand at 810.434 kb on + strand at 810.435 kb on - strand at 810.446 kb on - strand at 810.489 kb on + strand at 810.490 kb on - strand at 810.526 kb on + strand at 810.526 kb on + strand at 810.527 kb on - strand at 810.533 kb on + strand at 810.597 kb on - strand, within CA264_03475 at 810.635 kb on + strand, within CA264_03475 at 810.670 kb on - strand, within CA264_03475 at 811.019 kb on - strand, within CA264_03475 at 811.019 kb on - strand, within CA264_03475 at 811.048 kb on + strand, within CA264_03475 at 811.055 kb on + strand, within CA264_03475 at 811.055 kb on + strand, within CA264_03475 at 811.056 kb on - strand, within CA264_03475 at 811.056 kb on - strand, within CA264_03475 at 811.056 kb on - strand, within CA264_03475 at 811.114 kb on - strand, within CA264_03475
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 808,380 + CA264_03460 0.71 +0.1 808,380 + CA264_03460 0.71 +1.2 808,389 - CA264_03460 0.73 +0.0 808,439 + CA264_03460 0.85 -0.7 808,515 - -0.2 808,515 - -0.0 808,523 + -0.8 808,524 - -0.8 808,524 - +0.6 808,551 + -0.1 808,551 + -0.5 808,644 + CA264_03465 0.12 +0.1 808,645 - CA264_03465 0.13 +0.3 808,659 - CA264_03465 0.16 -0.5 808,706 - CA264_03465 0.25 -0.3 808,762 - CA264_03465 0.37 +0.9 808,817 + CA264_03465 0.48 +0.5 808,818 - CA264_03465 0.48 +1.5 808,821 + CA264_03465 0.49 +0.5 808,855 + CA264_03465 0.56 +0.3 808,956 - CA264_03465 0.77 -1.1 808,985 + CA264_03465 0.83 -0.8 809,068 + -1.3 809,068 + -0.3 809,069 - +0.3 809,072 + +0.1 809,072 + +0.1 809,190 + +0.7 809,215 + +0.3 809,305 + +0.9 809,316 + +0.5 809,316 + +0.2 809,338 + -0.0 809,383 + +0.0 809,401 + -0.2 809,589 + CA264_03470 0.28 +0.1 809,605 + CA264_03470 0.30 +0.3 809,683 - CA264_03470 0.41 +0.1 809,709 + CA264_03470 0.44 +0.1 809,710 - CA264_03470 0.44 -0.1 809,765 - CA264_03470 0.51 -0.0 809,904 + CA264_03470 0.69 +0.2 810,126 + -0.8 810,161 + +0.5 810,164 + +0.7 810,165 - -0.6 810,165 - -0.2 810,169 + -0.1 810,169 + +0.3 810,170 - -1.2 810,170 - +0.3 810,276 - +0.2 810,297 + +0.2 810,298 - -0.3 810,298 - +0.3 810,316 - -0.2 810,316 - -0.3 810,423 + -0.2 810,423 + -0.2 810,424 - -1.5 810,424 - +0.5 810,424 - -0.4 810,424 - -0.1 810,424 - +0.8 810,427 + -1.5 810,434 + +0.4 810,435 - +0.5 810,446 - -0.2 810,489 + +0.3 810,490 - -0.3 810,526 + +0.2 810,526 + +0.1 810,527 - +0.1 810,533 + +0.2 810,597 - CA264_03475 0.12 +0.4 810,635 + CA264_03475 0.17 +0.3 810,670 - CA264_03475 0.21 +2.5 811,019 - CA264_03475 0.61 +1.4 811,019 - CA264_03475 0.61 +1.3 811,048 + CA264_03475 0.64 +0.5 811,055 + CA264_03475 0.65 -2.3 811,055 + CA264_03475 0.65 +0.4 811,056 - CA264_03475 0.65 -0.8 811,056 - CA264_03475 0.65 +0.3 811,056 - CA264_03475 0.65 -0.2 811,114 - CA264_03475 0.71 +0.9
Or see this region's nucleotide sequence