Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03155 and CA264_03160 are separated by 3 nucleotides CA264_03160 and CA264_03165 are separated by 228 nucleotides
CA264_03155: CA264_03155 - hypothetical protein, at 737,482 to 738,237
_03155
CA264_03160: CA264_03160 - metallophosphoesterase, at 738,241 to 738,984
_03160
CA264_03165: CA264_03165 - acyl-CoA desaturase, at 739,213 to 740,283
_03165
Position (kb) 738
739 Strain fitness (log2 ratio) -2
-1
0
1
2 at 737.487 kb on + strand at 737.492 kb on + strand at 737.501 kb on + strand at 737.584 kb on - strand, within CA264_03155 at 737.623 kb on - strand, within CA264_03155 at 737.781 kb on + strand, within CA264_03155 at 737.902 kb on + strand, within CA264_03155 at 737.903 kb on - strand, within CA264_03155 at 737.951 kb on + strand, within CA264_03155 at 737.952 kb on - strand, within CA264_03155 at 737.968 kb on - strand, within CA264_03155 at 738.210 kb on + strand at 738.215 kb on + strand at 738.215 kb on + strand at 738.233 kb on + strand at 738.234 kb on - strand at 738.240 kb on + strand at 738.240 kb on + strand at 738.241 kb on - strand at 738.241 kb on - strand at 738.282 kb on - strand at 738.289 kb on - strand at 738.289 kb on - strand at 738.290 kb on + strand at 738.290 kb on + strand at 738.290 kb on + strand at 738.290 kb on + strand at 738.290 kb on + strand at 738.290 kb on + strand at 738.290 kb on + strand at 738.291 kb on - strand at 738.291 kb on - strand at 738.291 kb on - strand at 738.291 kb on - strand at 738.291 kb on - strand at 738.291 kb on - strand at 738.291 kb on - strand at 738.328 kb on + strand, within CA264_03160 at 738.396 kb on + strand, within CA264_03160 at 738.475 kb on + strand, within CA264_03160 at 738.666 kb on - strand, within CA264_03160 at 738.748 kb on + strand, within CA264_03160 at 738.967 kb on + strand at 738.968 kb on - strand at 738.970 kb on - strand at 739.000 kb on + strand at 739.001 kb on - strand at 739.023 kb on + strand at 739.043 kb on + strand at 739.069 kb on - strand at 739.069 kb on - strand at 739.072 kb on + strand at 739.120 kb on + strand at 739.123 kb on - strand at 739.133 kb on + strand at 739.140 kb on + strand at 739.140 kb on + strand at 739.140 kb on + strand at 739.169 kb on + strand at 739.169 kb on + strand at 739.191 kb on + strand at 739.213 kb on - strand at 739.283 kb on - strand at 739.319 kb on - strand at 739.320 kb on + strand, within CA264_03165 at 739.320 kb on + strand, within CA264_03165 at 739.321 kb on - strand, within CA264_03165 at 739.343 kb on + strand, within CA264_03165 at 739.348 kb on - strand, within CA264_03165 at 739.368 kb on - strand, within CA264_03165 at 739.374 kb on - strand, within CA264_03165 at 739.569 kb on + strand, within CA264_03165 at 739.584 kb on - strand, within CA264_03165 at 739.597 kb on + strand, within CA264_03165 at 739.598 kb on - strand, within CA264_03165 at 739.607 kb on + strand, within CA264_03165 at 739.607 kb on + strand, within CA264_03165 at 739.607 kb on + strand, within CA264_03165 at 739.608 kb on - strand, within CA264_03165 at 739.763 kb on - strand, within CA264_03165 at 739.783 kb on - strand, within CA264_03165 at 739.822 kb on - strand, within CA264_03165 at 739.836 kb on + strand, within CA264_03165 at 739.876 kb on + strand, within CA264_03165 at 739.877 kb on - strand, within CA264_03165 at 739.929 kb on - strand, within CA264_03165 at 739.948 kb on - strand, within CA264_03165
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 737,487 + +0.2 737,492 + +1.0 737,501 + -0.0 737,584 - CA264_03155 0.13 -0.2 737,623 - CA264_03155 0.19 +0.1 737,781 + CA264_03155 0.40 +0.2 737,902 + CA264_03155 0.56 +0.0 737,903 - CA264_03155 0.56 +0.5 737,951 + CA264_03155 0.62 -0.1 737,952 - CA264_03155 0.62 -0.6 737,968 - CA264_03155 0.64 -1.4 738,210 + +0.6 738,215 + -0.1 738,215 + +0.2 738,233 + -0.0 738,234 - +0.5 738,240 + -0.3 738,240 + -0.7 738,241 - -0.6 738,241 - +0.0 738,282 - -0.7 738,289 - +0.2 738,289 - -0.5 738,290 + -0.3 738,290 + +0.4 738,290 + -0.2 738,290 + +0.6 738,290 + +0.1 738,290 + -0.1 738,290 + -0.3 738,291 - -0.4 738,291 - +0.1 738,291 - -1.1 738,291 - -0.1 738,291 - +0.0 738,291 - +0.4 738,291 - -0.4 738,328 + CA264_03160 0.12 +0.5 738,396 + CA264_03160 0.21 -0.4 738,475 + CA264_03160 0.31 +0.5 738,666 - CA264_03160 0.57 +1.7 738,748 + CA264_03160 0.68 -0.5 738,967 + -0.4 738,968 - -0.1 738,970 - +2.3 739,000 + -0.6 739,001 - -2.1 739,023 + +1.5 739,043 + -0.1 739,069 - -0.4 739,069 - +0.4 739,072 + +0.1 739,120 + +0.8 739,123 - -0.2 739,133 + +0.2 739,140 + -0.1 739,140 + -0.9 739,140 + +0.3 739,169 + +0.7 739,169 + -2.7 739,191 + -0.2 739,213 - +0.4 739,283 - +0.1 739,319 - +0.5 739,320 + CA264_03165 0.10 +0.9 739,320 + CA264_03165 0.10 +0.3 739,321 - CA264_03165 0.10 +0.0 739,343 + CA264_03165 0.12 -0.1 739,348 - CA264_03165 0.13 -0.1 739,368 - CA264_03165 0.14 -1.0 739,374 - CA264_03165 0.15 +0.1 739,569 + CA264_03165 0.33 +0.5 739,584 - CA264_03165 0.35 -0.1 739,597 + CA264_03165 0.36 +0.7 739,598 - CA264_03165 0.36 -0.2 739,607 + CA264_03165 0.37 +0.3 739,607 + CA264_03165 0.37 +0.8 739,607 + CA264_03165 0.37 -1.1 739,608 - CA264_03165 0.37 +0.5 739,763 - CA264_03165 0.51 -0.2 739,783 - CA264_03165 0.53 +0.2 739,822 - CA264_03165 0.57 +0.0 739,836 + CA264_03165 0.58 -0.4 739,876 + CA264_03165 0.62 +1.4 739,877 - CA264_03165 0.62 +0.8 739,929 - CA264_03165 0.67 -0.3 739,948 - CA264_03165 0.69 -0.4
Or see this region's nucleotide sequence