Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02250 and CA264_02255 are separated by 564 nucleotides CA264_02255 and CA264_02260 are separated by 45 nucleotides
CA264_02250: CA264_02250 - peptidase M61, at 520,022 to 521,608
_02250
CA264_02255: CA264_02255 - hypothetical protein, at 522,173 to 522,916
_02255
CA264_02260: CA264_02260 - hypothetical protein, at 522,962 to 525,358
_02260
Position (kb) 522
523 Strain fitness (log2 ratio) -2
-1
0
1
2 at 521.211 kb on + strand, within CA264_02250 at 521.212 kb on - strand, within CA264_02250 at 521.272 kb on - strand, within CA264_02250 at 521.272 kb on - strand, within CA264_02250 at 521.301 kb on + strand, within CA264_02250 at 521.367 kb on + strand, within CA264_02250 at 521.368 kb on - strand, within CA264_02250 at 521.475 kb on - strand at 521.502 kb on - strand at 521.544 kb on + strand at 521.554 kb on + strand at 521.554 kb on + strand at 521.634 kb on + strand at 521.756 kb on + strand at 521.756 kb on + strand at 521.756 kb on + strand at 521.757 kb on - strand at 521.757 kb on - strand at 521.799 kb on + strand at 521.799 kb on + strand at 521.847 kb on - strand at 521.857 kb on + strand at 521.878 kb on + strand at 521.892 kb on - strand at 521.897 kb on - strand at 521.930 kb on + strand at 521.931 kb on - strand at 521.931 kb on - strand at 521.955 kb on + strand at 521.985 kb on - strand at 521.985 kb on - strand at 522.055 kb on - strand at 522.107 kb on - strand at 522.126 kb on + strand at 522.134 kb on + strand at 522.264 kb on + strand, within CA264_02255 at 522.267 kb on + strand, within CA264_02255 at 522.267 kb on + strand, within CA264_02255 at 522.268 kb on - strand, within CA264_02255 at 522.359 kb on + strand, within CA264_02255 at 522.475 kb on + strand, within CA264_02255 at 522.512 kb on + strand, within CA264_02255 at 522.512 kb on + strand, within CA264_02255 at 522.548 kb on + strand, within CA264_02255 at 522.549 kb on - strand, within CA264_02255 at 522.549 kb on - strand, within CA264_02255 at 522.622 kb on + strand, within CA264_02255 at 522.671 kb on + strand, within CA264_02255 at 522.671 kb on + strand, within CA264_02255 at 522.672 kb on - strand, within CA264_02255 at 522.906 kb on - strand at 523.038 kb on - strand at 523.089 kb on - strand at 523.089 kb on - strand at 523.196 kb on + strand at 523.196 kb on + strand at 523.197 kb on - strand at 523.204 kb on + strand, within CA264_02260 at 523.204 kb on + strand, within CA264_02260 at 523.308 kb on - strand, within CA264_02260 at 523.395 kb on + strand, within CA264_02260 at 523.704 kb on + strand, within CA264_02260 at 523.704 kb on + strand, within CA264_02260 at 523.813 kb on + strand, within CA264_02260
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 521,211 + CA264_02250 0.75 +0.5 521,212 - CA264_02250 0.75 -0.5 521,272 - CA264_02250 0.79 -0.3 521,272 - CA264_02250 0.79 -0.6 521,301 + CA264_02250 0.81 +0.0 521,367 + CA264_02250 0.85 +1.0 521,368 - CA264_02250 0.85 +0.0 521,475 - +0.3 521,502 - +0.5 521,544 + +1.2 521,554 + +0.1 521,554 + -0.1 521,634 + -1.5 521,756 + -0.2 521,756 + +0.2 521,756 + -0.5 521,757 - +1.5 521,757 - +1.2 521,799 + +0.5 521,799 + -0.6 521,847 - -0.4 521,857 + +0.8 521,878 + +0.5 521,892 - -0.0 521,897 - -0.2 521,930 + +0.0 521,931 - +0.3 521,931 - -0.0 521,955 + +0.3 521,985 - -1.1 521,985 - -0.2 522,055 - -0.1 522,107 - +1.7 522,126 + -0.2 522,134 + -0.3 522,264 + CA264_02255 0.12 -0.6 522,267 + CA264_02255 0.13 -0.4 522,267 + CA264_02255 0.13 +2.2 522,268 - CA264_02255 0.13 -0.8 522,359 + CA264_02255 0.25 -0.4 522,475 + CA264_02255 0.41 -0.7 522,512 + CA264_02255 0.46 -1.3 522,512 + CA264_02255 0.46 -0.8 522,548 + CA264_02255 0.50 -0.8 522,549 - CA264_02255 0.51 +1.5 522,549 - CA264_02255 0.51 +0.1 522,622 + CA264_02255 0.60 +0.1 522,671 + CA264_02255 0.67 -2.1 522,671 + CA264_02255 0.67 -1.1 522,672 - CA264_02255 0.67 -0.1 522,906 - -1.2 523,038 - +0.0 523,089 - +0.2 523,089 - -0.0 523,196 + +0.5 523,196 + -0.0 523,197 - +0.3 523,204 + CA264_02260 0.10 -1.0 523,204 + CA264_02260 0.10 -1.3 523,308 - CA264_02260 0.14 +0.8 523,395 + CA264_02260 0.18 +0.5 523,704 + CA264_02260 0.31 +0.1 523,704 + CA264_02260 0.31 -2.1 523,813 + CA264_02260 0.36 +0.5
Or see this region's nucleotide sequence