Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00930 and CA264_00935 are separated by 103 nucleotides CA264_00935 and CA264_00940 are separated by 127 nucleotides CA264_00940 and CA264_00945 are separated by 89 nucleotides
CA264_00930: CA264_00930 - phosphorylase, at 199,188 to 200,045
_00930
CA264_00935: CA264_00935 - hypothetical protein, at 200,149 to 200,448
_00935
CA264_00940: CA264_00940 - hypothetical protein, at 200,576 to 200,875
_00940
CA264_00945: CA264_00945 - acyl-CoA reductase, at 200,965 to 201,975
_00945
Position (kb) 200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 199.194 kb on - strand at 199.194 kb on - strand at 199.217 kb on + strand at 199.384 kb on - strand, within CA264_00930 at 199.384 kb on - strand, within CA264_00930 at 199.385 kb on + strand, within CA264_00930 at 199.386 kb on - strand, within CA264_00930 at 199.656 kb on - strand, within CA264_00930 at 199.658 kb on - strand, within CA264_00930 at 199.701 kb on + strand, within CA264_00930 at 199.739 kb on - strand, within CA264_00930 at 199.769 kb on + strand, within CA264_00930 at 199.769 kb on + strand, within CA264_00930 at 199.770 kb on - strand, within CA264_00930 at 199.846 kb on - strand, within CA264_00930 at 199.846 kb on - strand, within CA264_00930 at 199.846 kb on - strand, within CA264_00930 at 199.878 kb on - strand, within CA264_00930 at 199.908 kb on + strand, within CA264_00930 at 199.955 kb on + strand, within CA264_00930 at 199.961 kb on - strand at 200.086 kb on + strand at 200.087 kb on - strand at 200.135 kb on + strand at 200.157 kb on - strand at 200.157 kb on - strand at 200.157 kb on - strand at 200.253 kb on + strand, within CA264_00935 at 200.336 kb on + strand, within CA264_00935 at 200.336 kb on + strand, within CA264_00935 at 200.472 kb on + strand at 200.474 kb on + strand at 200.475 kb on - strand at 200.475 kb on - strand at 200.476 kb on + strand at 200.578 kb on - strand at 200.600 kb on - strand at 200.767 kb on + strand, within CA264_00940 at 200.767 kb on + strand, within CA264_00940 at 200.887 kb on + strand at 200.915 kb on + strand at 200.959 kb on - strand at 201.261 kb on - strand, within CA264_00945
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 199,194 - +0.2 199,194 - -1.6 199,217 + +1.1 199,384 - CA264_00930 0.23 -0.2 199,384 - CA264_00930 0.23 +0.1 199,385 + CA264_00930 0.23 +0.2 199,386 - CA264_00930 0.23 -0.3 199,656 - CA264_00930 0.55 +0.2 199,658 - CA264_00930 0.55 -1.0 199,701 + CA264_00930 0.60 +2.4 199,739 - CA264_00930 0.64 -0.6 199,769 + CA264_00930 0.68 +0.1 199,769 + CA264_00930 0.68 -0.4 199,770 - CA264_00930 0.68 +0.6 199,846 - CA264_00930 0.77 -1.8 199,846 - CA264_00930 0.77 -0.4 199,846 - CA264_00930 0.77 +0.7 199,878 - CA264_00930 0.80 +0.1 199,908 + CA264_00930 0.84 -1.2 199,955 + CA264_00930 0.89 -0.4 199,961 - +0.1 200,086 + +0.2 200,087 - +0.6 200,135 + -1.0 200,157 - +2.0 200,157 - +0.6 200,157 - -0.2 200,253 + CA264_00935 0.35 -0.4 200,336 + CA264_00935 0.62 +0.0 200,336 + CA264_00935 0.62 +0.5 200,472 + +0.3 200,474 + +0.4 200,475 - +1.9 200,475 - -0.2 200,476 + -0.4 200,578 - -0.7 200,600 - -0.4 200,767 + CA264_00940 0.64 -0.1 200,767 + CA264_00940 0.64 +0.4 200,887 + -0.6 200,915 + +0.3 200,959 - +0.0 201,261 - CA264_00945 0.29 -0.2
Or see this region's nucleotide sequence