Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00575 and CA264_00580 are separated by 136 nucleotides CA264_00580 and CA264_00585 are separated by 255 nucleotides CA264_00585 and CA264_00590 are separated by 44 nucleotides
CA264_00575: CA264_00575 - MFS transporter, at 127,543 to 128,811
_00575
CA264_00580: CA264_00580 - aminoacyl-tRNA hydrolase, at 128,948 to 129,511
_00580
CA264_00585: CA264_00585 - 50S ribosomal protein L25/general stress protein Ctc, at 129,767 to 130,351
_00585
CA264_00590: CA264_00590 - ribose-phosphate pyrophosphokinase, at 130,396 to 131,325
_00590
Position (kb) 128
129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 127.977 kb on - strand, within CA264_00575 at 128.055 kb on + strand, within CA264_00575 at 128.055 kb on + strand, within CA264_00575 at 128.056 kb on - strand, within CA264_00575 at 128.056 kb on - strand, within CA264_00575 at 128.056 kb on - strand, within CA264_00575 at 128.057 kb on + strand, within CA264_00575 at 128.057 kb on + strand, within CA264_00575 at 128.057 kb on + strand, within CA264_00575 at 128.058 kb on - strand, within CA264_00575 at 128.058 kb on - strand, within CA264_00575 at 128.072 kb on + strand, within CA264_00575 at 128.140 kb on + strand, within CA264_00575 at 128.307 kb on - strand, within CA264_00575 at 128.311 kb on + strand, within CA264_00575 at 128.415 kb on - strand, within CA264_00575 at 128.520 kb on + strand, within CA264_00575 at 128.525 kb on + strand, within CA264_00575 at 128.526 kb on - strand, within CA264_00575 at 128.528 kb on - strand, within CA264_00575 at 128.566 kb on - strand, within CA264_00575 at 128.630 kb on + strand, within CA264_00575 at 128.666 kb on + strand, within CA264_00575 at 128.688 kb on - strand at 128.741 kb on - strand at 128.815 kb on - strand at 128.820 kb on + strand at 128.846 kb on - strand at 128.922 kb on + strand at 128.924 kb on + strand at 128.927 kb on + strand at 128.928 kb on - strand at 128.950 kb on - strand at 129.511 kb on + strand at 129.593 kb on - strand at 129.646 kb on - strand at 129.646 kb on - strand at 129.673 kb on + strand at 129.683 kb on + strand at 130.379 kb on - strand at 130.393 kb on + strand at 130.394 kb on - strand at 130.397 kb on + strand at 130.398 kb on - strand at 130.402 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 127,977 - CA264_00575 0.34 +0.1 128,055 + CA264_00575 0.40 +1.1 128,055 + CA264_00575 0.40 +1.2 128,056 - CA264_00575 0.40 +0.0 128,056 - CA264_00575 0.40 +0.4 128,056 - CA264_00575 0.40 +0.3 128,057 + CA264_00575 0.41 -2.4 128,057 + CA264_00575 0.41 -2.1 128,057 + CA264_00575 0.41 +0.4 128,058 - CA264_00575 0.41 -0.5 128,058 - CA264_00575 0.41 +0.2 128,072 + CA264_00575 0.42 +0.0 128,140 + CA264_00575 0.47 +2.6 128,307 - CA264_00575 0.60 +0.4 128,311 + CA264_00575 0.61 -2.1 128,415 - CA264_00575 0.69 +0.4 128,520 + CA264_00575 0.77 +0.1 128,525 + CA264_00575 0.77 -0.3 128,526 - CA264_00575 0.77 -0.1 128,528 - CA264_00575 0.78 -0.3 128,566 - CA264_00575 0.81 -0.0 128,630 + CA264_00575 0.86 +1.6 128,666 + CA264_00575 0.88 +1.6 128,688 - -0.2 128,741 - -1.4 128,815 - +0.1 128,820 + +0.3 128,846 - -1.1 128,922 + +0.1 128,924 + -0.1 128,927 + +0.1 128,928 - -0.6 128,950 - -0.9 129,511 + +0.4 129,593 - -1.1 129,646 - +0.9 129,646 - +0.4 129,673 + +0.6 129,683 + -0.6 130,379 - -1.6 130,393 + +0.4 130,394 - +1.2 130,397 + -1.6 130,398 - +0.7 130,402 - +1.5
Or see this region's nucleotide sequence