Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00550 and CA264_00555 are separated by 205 nucleotides CA264_00555 and CA264_00560 are separated by 170 nucleotides CA264_00560 and CA264_00565 are separated by 59 nucleotides CA264_00565 and CA264_00570 are separated by 219 nucleotides
CA264_00550: CA264_00550 - heme oxygenase, at 123,171 to 123,947
_00550
CA264_00555: CA264_00555 - hypothetical protein, at 124,153 to 124,356
_00555
CA264_00560: CA264_00560 - hypothetical protein, at 124,527 to 124,868
_00560
CA264_00565: CA264_00565 - hypothetical protein, at 124,928 to 125,161
_00565
CA264_00570: CA264_00570 - methionine--tRNA ligase, at 125,381 to 127,420
_00570
Position (kb)
124
125 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 123.538 kb on + strand, within CA264_00550 at 123.538 kb on + strand, within CA264_00550 at 123.665 kb on + strand, within CA264_00550 at 123.755 kb on + strand, within CA264_00550 at 123.755 kb on + strand, within CA264_00550 at 123.755 kb on + strand, within CA264_00550 at 123.755 kb on + strand, within CA264_00550 at 123.757 kb on + strand, within CA264_00550 at 123.757 kb on + strand, within CA264_00550 at 123.758 kb on - strand, within CA264_00550 at 123.758 kb on - strand, within CA264_00550 at 123.758 kb on - strand, within CA264_00550 at 123.758 kb on - strand, within CA264_00550 at 123.759 kb on + strand, within CA264_00550 at 123.762 kb on + strand, within CA264_00550 at 123.762 kb on + strand, within CA264_00550 at 123.763 kb on - strand, within CA264_00550 at 124.006 kb on + strand at 124.007 kb on - strand at 124.077 kb on + strand at 124.093 kb on - strand at 124.125 kb on + strand at 124.126 kb on - strand at 124.126 kb on - strand at 124.130 kb on + strand at 124.130 kb on + strand at 124.131 kb on - strand at 124.131 kb on - strand at 124.201 kb on + strand, within CA264_00555 at 124.339 kb on - strand at 124.407 kb on - strand at 124.463 kb on - strand at 124.463 kb on - strand at 124.468 kb on + strand at 124.469 kb on - strand at 124.469 kb on - strand at 124.469 kb on - strand at 124.473 kb on + strand at 124.475 kb on + strand at 124.479 kb on + strand at 124.479 kb on + strand at 124.504 kb on + strand at 124.504 kb on + strand at 124.505 kb on - strand at 124.505 kb on - strand at 124.537 kb on - strand at 124.537 kb on - strand at 124.543 kb on + strand at 124.543 kb on + strand at 124.543 kb on + strand at 124.543 kb on + strand at 124.543 kb on + strand at 124.543 kb on + strand at 124.543 kb on + strand at 124.544 kb on - strand at 124.544 kb on - strand at 124.544 kb on - strand at 124.545 kb on + strand at 124.545 kb on + strand at 124.545 kb on + strand at 124.545 kb on + strand at 124.545 kb on + strand at 124.546 kb on - strand at 124.546 kb on - strand at 124.546 kb on - strand at 124.546 kb on - strand at 124.546 kb on - strand at 124.546 kb on - strand at 124.546 kb on - strand at 124.548 kb on - strand at 124.565 kb on - strand, within CA264_00560 at 124.650 kb on + strand, within CA264_00560 at 124.821 kb on + strand, within CA264_00560 at 124.821 kb on + strand, within CA264_00560 at 124.822 kb on - strand, within CA264_00560 at 124.822 kb on - strand, within CA264_00560 at 124.822 kb on - strand, within CA264_00560 at 124.833 kb on + strand, within CA264_00560 at 124.834 kb on - strand at 124.894 kb on - strand at 125.012 kb on + strand, within CA264_00565 at 125.016 kb on + strand, within CA264_00565 at 125.146 kb on + strand at 125.147 kb on - strand at 125.161 kb on + strand at 125.161 kb on + strand at 125.162 kb on - strand at 125.162 kb on - strand at 125.226 kb on - strand at 125.226 kb on - strand at 125.292 kb on + strand at 125.293 kb on - strand at 125.301 kb on - strand at 125.302 kb on + strand at 125.303 kb on - strand at 125.303 kb on - strand at 125.351 kb on - strand at 125.351 kb on - strand at 125.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 123,538 + CA264_00550 0.47 +0.7 123,538 + CA264_00550 0.47 +0.4 123,665 + CA264_00550 0.64 +2.2 123,755 + CA264_00550 0.75 -0.6 123,755 + CA264_00550 0.75 +1.0 123,755 + CA264_00550 0.75 +0.3 123,755 + CA264_00550 0.75 -0.3 123,757 + CA264_00550 0.75 +0.1 123,757 + CA264_00550 0.75 +0.2 123,758 - CA264_00550 0.76 +0.3 123,758 - CA264_00550 0.76 +0.7 123,758 - CA264_00550 0.76 +1.7 123,758 - CA264_00550 0.76 +0.2 123,759 + CA264_00550 0.76 -0.5 123,762 + CA264_00550 0.76 +0.4 123,762 + CA264_00550 0.76 +0.1 123,763 - CA264_00550 0.76 +1.3 124,006 + +0.4 124,007 - +0.9 124,077 + +1.4 124,093 - -1.7 124,125 + -1.5 124,126 - +0.9 124,126 - +1.0 124,130 + -0.5 124,130 + +0.0 124,131 - +0.0 124,131 - +1.2 124,201 + CA264_00555 0.24 +0.4 124,339 - +0.2 124,407 - -0.2 124,463 - -0.8 124,463 - +0.3 124,468 + +0.7 124,469 - -1.6 124,469 - -0.4 124,469 - +0.4 124,473 + -0.2 124,475 + -0.0 124,479 + +0.3 124,479 + -0.8 124,504 + +0.2 124,504 + +0.2 124,505 - -0.4 124,505 - +0.1 124,537 - +0.9 124,537 - -0.8 124,543 + +0.4 124,543 + +0.9 124,543 + -0.1 124,543 + +0.4 124,543 + -1.7 124,543 + +0.2 124,543 + -0.1 124,544 - +0.3 124,544 - +1.4 124,544 - +0.2 124,545 + -1.6 124,545 + +0.1 124,545 + -0.7 124,545 + +0.1 124,545 + -0.4 124,546 - +0.3 124,546 - +1.0 124,546 - -1.1 124,546 - -0.3 124,546 - +0.2 124,546 - -0.0 124,546 - +0.1 124,548 - -0.0 124,565 - CA264_00560 0.11 +0.8 124,650 + CA264_00560 0.36 -0.2 124,821 + CA264_00560 0.86 +0.8 124,821 + CA264_00560 0.86 -0.3 124,822 - CA264_00560 0.86 +0.6 124,822 - CA264_00560 0.86 -1.3 124,822 - CA264_00560 0.86 +0.4 124,833 + CA264_00560 0.89 -0.1 124,834 - +0.4 124,894 - +0.2 125,012 + CA264_00565 0.36 -0.3 125,016 + CA264_00565 0.38 +0.7 125,146 + -0.2 125,147 - +0.1 125,161 + -0.2 125,161 + -2.0 125,162 - +0.4 125,162 - -0.0 125,226 - +0.9 125,226 - -0.7 125,292 + -0.1 125,293 - +1.9 125,301 - +0.4 125,302 + -0.9 125,303 - -0.4 125,303 - +1.4 125,351 - -0.0 125,351 - +0.1 125,359 - +0.4
Or see this region's nucleotide sequence