Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00420 and CA264_00425 are separated by 254 nucleotides CA264_00425 and CA264_00430 are separated by 119 nucleotides CA264_00430 and CA264_00435 are separated by 22 nucleotides
CA264_00420: CA264_00420 - fructose-bisphosphatase class I, at 91,552 to 92,559
_00420
CA264_00425: CA264_00425 - hypothetical protein, at 92,814 to 93,122
_00425
CA264_00430: CA264_00430 - hypothetical protein, at 93,242 to 93,706
_00430
CA264_00435: CA264_00435 - energy transducer TonB, at 93,729 to 94,136
_00435
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 91.837 kb on - strand, within CA264_00420 at 91.888 kb on + strand, within CA264_00420 at 91.888 kb on + strand, within CA264_00420 at 92.057 kb on - strand, within CA264_00420 at 92.113 kb on + strand, within CA264_00420 at 92.178 kb on + strand, within CA264_00420 at 92.199 kb on + strand, within CA264_00420 at 92.234 kb on - strand, within CA264_00420 at 92.243 kb on - strand, within CA264_00420 at 92.401 kb on - strand, within CA264_00420 at 92.522 kb on + strand at 92.522 kb on + strand at 92.546 kb on + strand at 92.582 kb on + strand at 92.587 kb on + strand at 92.587 kb on + strand at 92.588 kb on - strand at 92.588 kb on - strand at 92.738 kb on + strand at 92.738 kb on + strand at 92.788 kb on + strand at 93.060 kb on + strand, within CA264_00425 at 93.102 kb on + strand at 93.102 kb on + strand at 93.103 kb on - strand at 93.177 kb on - strand at 93.183 kb on - strand at 93.196 kb on + strand at 93.197 kb on - strand at 93.197 kb on - strand at 93.243 kb on + strand at 93.327 kb on + strand, within CA264_00430 at 93.378 kb on + strand, within CA264_00430 at 93.378 kb on + strand, within CA264_00430 at 93.379 kb on - strand, within CA264_00430 at 93.401 kb on - strand, within CA264_00430 at 93.407 kb on + strand, within CA264_00430 at 93.408 kb on - strand, within CA264_00430 at 93.474 kb on + strand, within CA264_00430 at 93.474 kb on + strand, within CA264_00430 at 93.537 kb on + strand, within CA264_00430 at 93.537 kb on + strand, within CA264_00430 at 93.538 kb on - strand, within CA264_00430 at 93.538 kb on - strand, within CA264_00430 at 93.565 kb on + strand, within CA264_00430 at 93.648 kb on - strand, within CA264_00430 at 93.706 kb on + strand at 93.706 kb on + strand at 93.706 kb on + strand at 93.706 kb on + strand at 93.706 kb on + strand at 93.707 kb on - strand at 93.707 kb on - strand at 93.710 kb on + strand at 93.710 kb on + strand at 93.715 kb on + strand at 93.716 kb on - strand at 93.716 kb on - strand at 93.723 kb on + strand at 93.724 kb on - strand at 93.726 kb on - strand at 93.730 kb on + strand at 93.732 kb on + strand at 93.737 kb on + strand at 93.762 kb on + strand at 93.857 kb on + strand, within CA264_00435 at 93.858 kb on - strand, within CA264_00435 at 93.964 kb on + strand, within CA264_00435 at 93.964 kb on + strand, within CA264_00435 at 93.964 kb on + strand, within CA264_00435 at 93.965 kb on - strand, within CA264_00435
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 91,837 - CA264_00420 0.28 +3.6 91,888 + CA264_00420 0.33 +4.8 91,888 + CA264_00420 0.33 +4.1 92,057 - CA264_00420 0.50 +3.9 92,113 + CA264_00420 0.56 +3.2 92,178 + CA264_00420 0.62 +5.4 92,199 + CA264_00420 0.64 +5.1 92,234 - CA264_00420 0.68 +3.2 92,243 - CA264_00420 0.69 +4.8 92,401 - CA264_00420 0.84 +0.4 92,522 + +0.8 92,522 + +0.6 92,546 + +1.4 92,582 + -0.6 92,587 + +1.4 92,587 + -0.3 92,588 - +0.8 92,588 - -0.1 92,738 + -1.6 92,738 + +0.0 92,788 + +0.2 93,060 + CA264_00425 0.80 -0.6 93,102 + -0.5 93,102 + +0.0 93,103 - -1.2 93,177 - +0.4 93,183 - -0.1 93,196 + -0.3 93,197 - +0.7 93,197 - +0.0 93,243 + +0.1 93,327 + CA264_00430 0.18 +0.7 93,378 + CA264_00430 0.29 +0.2 93,378 + CA264_00430 0.29 -0.1 93,379 - CA264_00430 0.29 +0.1 93,401 - CA264_00430 0.34 +0.2 93,407 + CA264_00430 0.35 +0.4 93,408 - CA264_00430 0.36 -0.6 93,474 + CA264_00430 0.50 -0.5 93,474 + CA264_00430 0.50 -0.4 93,537 + CA264_00430 0.63 -0.1 93,537 + CA264_00430 0.63 -2.1 93,538 - CA264_00430 0.64 -0.0 93,538 - CA264_00430 0.64 -0.1 93,565 + CA264_00430 0.69 +0.6 93,648 - CA264_00430 0.87 -0.6 93,706 + +0.1 93,706 + -0.4 93,706 + -1.0 93,706 + -0.2 93,706 + -0.1 93,707 - -0.1 93,707 - -0.1 93,710 + +0.1 93,710 + -0.2 93,715 + +0.3 93,716 - +0.8 93,716 - +0.4 93,723 + -1.1 93,724 - -0.2 93,726 - -0.6 93,730 + -0.0 93,732 + -0.6 93,737 + +1.1 93,762 + +0.9 93,857 + CA264_00435 0.31 -0.1 93,858 - CA264_00435 0.32 -0.1 93,964 + CA264_00435 0.58 +0.4 93,964 + CA264_00435 0.58 +0.9 93,964 + CA264_00435 0.58 -0.5 93,965 - CA264_00435 0.58 -0.4
Or see this region's nucleotide sequence