Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00030 and CA264_00035 are separated by 59 nucleotides CA264_00035 and CA264_00040 are separated by 428 nucleotides
CA264_00030: CA264_00030 - peptidoglycan-binding protein, at 6,928 to 8,055
_00030
CA264_00035: CA264_00035 - hypothetical protein, at 8,115 to 8,621
_00035
CA264_00040: CA264_00040 - hypothetical protein, at 9,050 to 11,023
_00040
Position (kb)
8
9 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 7.146 kb on + strand, within CA264_00030 at 7.146 kb on + strand, within CA264_00030 at 7.178 kb on - strand, within CA264_00030 at 7.352 kb on - strand, within CA264_00030 at 7.397 kb on + strand, within CA264_00030 at 7.397 kb on + strand, within CA264_00030 at 7.398 kb on - strand, within CA264_00030 at 7.399 kb on + strand, within CA264_00030 at 7.400 kb on - strand, within CA264_00030 at 7.400 kb on - strand, within CA264_00030 at 7.400 kb on - strand, within CA264_00030 at 7.400 kb on - strand, within CA264_00030 at 7.437 kb on + strand, within CA264_00030 at 7.592 kb on - strand, within CA264_00030 at 7.599 kb on + strand, within CA264_00030 at 7.668 kb on - strand, within CA264_00030 at 7.807 kb on + strand, within CA264_00030 at 7.811 kb on - strand, within CA264_00030 at 7.811 kb on - strand, within CA264_00030 at 7.880 kb on - strand, within CA264_00030 at 7.903 kb on + strand, within CA264_00030 at 7.913 kb on - strand, within CA264_00030 at 7.956 kb on - strand at 8.014 kb on - strand at 8.014 kb on - strand at 8.053 kb on + strand at 8.054 kb on - strand at 8.121 kb on + strand at 8.123 kb on + strand at 8.124 kb on - strand at 8.252 kb on + strand, within CA264_00035 at 8.417 kb on - strand, within CA264_00035 at 8.451 kb on + strand, within CA264_00035 at 8.451 kb on + strand, within CA264_00035 at 8.451 kb on + strand, within CA264_00035 at 8.467 kb on + strand, within CA264_00035 at 8.493 kb on + strand, within CA264_00035 at 8.493 kb on + strand, within CA264_00035 at 8.540 kb on + strand, within CA264_00035 at 8.540 kb on + strand, within CA264_00035 at 8.549 kb on + strand, within CA264_00035 at 8.550 kb on - strand, within CA264_00035 at 8.584 kb on + strand at 8.585 kb on - strand at 8.639 kb on + strand at 8.699 kb on - strand at 8.699 kb on - strand at 8.742 kb on + strand at 8.742 kb on + strand at 8.742 kb on + strand at 8.749 kb on - strand at 8.782 kb on + strand at 8.782 kb on + strand at 8.783 kb on - strand at 8.783 kb on - strand at 8.783 kb on - strand at 8.783 kb on - strand at 8.830 kb on - strand at 8.831 kb on + strand at 8.832 kb on - strand at 8.914 kb on + strand at 8.914 kb on + strand at 8.914 kb on + strand at 8.914 kb on + strand at 8.914 kb on + strand at 8.915 kb on - strand at 8.917 kb on + strand at 8.917 kb on + strand at 8.943 kb on - strand at 8.950 kb on - strand at 8.974 kb on + strand at 9.034 kb on + strand at 9.047 kb on + strand at 9.048 kb on - strand at 9.052 kb on - strand at 9.077 kb on - strand at 9.147 kb on + strand at 9.148 kb on - strand at 9.154 kb on + strand at 9.241 kb on + strand at 9.353 kb on - strand, within CA264_00040 at 9.408 kb on + strand, within CA264_00040 at 9.409 kb on - strand, within CA264_00040 at 9.409 kb on - strand, within CA264_00040 at 9.409 kb on - strand, within CA264_00040 at 9.508 kb on - strand, within CA264_00040
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 7,146 + CA264_00030 0.19 +0.6 7,146 + CA264_00030 0.19 +0.3 7,178 - CA264_00030 0.22 -0.3 7,352 - CA264_00030 0.38 +1.2 7,397 + CA264_00030 0.42 +0.8 7,397 + CA264_00030 0.42 +0.5 7,398 - CA264_00030 0.42 +1.4 7,399 + CA264_00030 0.42 +0.8 7,400 - CA264_00030 0.42 +0.2 7,400 - CA264_00030 0.42 +0.9 7,400 - CA264_00030 0.42 +1.2 7,400 - CA264_00030 0.42 +1.4 7,437 + CA264_00030 0.45 -0.6 7,592 - CA264_00030 0.59 -1.1 7,599 + CA264_00030 0.59 +1.4 7,668 - CA264_00030 0.66 +0.7 7,807 + CA264_00030 0.78 +0.4 7,811 - CA264_00030 0.78 +0.2 7,811 - CA264_00030 0.78 +1.4 7,880 - CA264_00030 0.84 -1.1 7,903 + CA264_00030 0.86 +0.7 7,913 - CA264_00030 0.87 +0.2 7,956 - -0.1 8,014 - -0.9 8,014 - +1.7 8,053 + -0.5 8,054 - +0.9 8,121 + +0.9 8,123 + -0.1 8,124 - -0.4 8,252 + CA264_00035 0.27 -0.1 8,417 - CA264_00035 0.60 -1.1 8,451 + CA264_00035 0.66 -0.7 8,451 + CA264_00035 0.66 -1.0 8,451 + CA264_00035 0.66 -0.0 8,467 + CA264_00035 0.69 -0.5 8,493 + CA264_00035 0.75 -1.9 8,493 + CA264_00035 0.75 -0.2 8,540 + CA264_00035 0.84 -0.1 8,540 + CA264_00035 0.84 +1.1 8,549 + CA264_00035 0.86 -0.2 8,550 - CA264_00035 0.86 -2.7 8,584 + +1.7 8,585 - -0.0 8,639 + -0.6 8,699 - -1.4 8,699 - -0.4 8,742 + +0.3 8,742 + -1.2 8,742 + +1.4 8,749 - -0.8 8,782 + -0.9 8,782 + -0.3 8,783 - -1.1 8,783 - -1.1 8,783 - -1.4 8,783 - -1.4 8,830 - +0.7 8,831 + +0.7 8,832 - +0.0 8,914 + +1.8 8,914 + +0.1 8,914 + -0.8 8,914 + -0.7 8,914 + +0.4 8,915 - -1.3 8,917 + +0.6 8,917 + -0.3 8,943 - +0.7 8,950 - -0.1 8,974 + +0.4 9,034 + -1.9 9,047 + +0.0 9,048 - +0.4 9,052 - +1.4 9,077 - -0.7 9,147 + +0.2 9,148 - -0.6 9,154 + -0.6 9,241 + +1.2 9,353 - CA264_00040 0.15 -0.2 9,408 + CA264_00040 0.18 +0.7 9,409 - CA264_00040 0.18 +0.0 9,409 - CA264_00040 0.18 -0.1 9,409 - CA264_00040 0.18 +0.2 9,508 - CA264_00040 0.23 +0.4
Or see this region's nucleotide sequence