Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29455

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29450 and ABID97_RS29455 are separated by 82 nucleotidesABID97_RS29455 and ABID97_RS29460 are separated by 12 nucleotidesABID97_RS29460 and ABID97_RS29465 overlap by 4 nucleotides ABID97_RS29450: ABID97_RS29450 - aldehyde dehydrogenase family protein, at 813,309 to 814,811 _RS29450 ABID97_RS29455: ABID97_RS29455 - ABC transporter substrate-binding protein, at 814,894 to 816,114 _RS29455 ABID97_RS29460: ABID97_RS29460 - branched-chain amino acid ABC transporter permease, at 816,127 to 816,996 _RS29460 ABID97_RS29465: ABID97_RS29465 - branched-chain amino acid ABC transporter permease, at 816,993 to 818,063 _RS29465 Position (kb) 814 815 816 817Strain fitness (log2 ratio) -1 0 1at 814.843 kb on + strandat 814.843 kb on + strandat 815.054 kb on - strand, within ABID97_RS29455at 815.372 kb on - strand, within ABID97_RS29455at 816.113 kb on - strandat 816.178 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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814,843 + -0.5
814,843 + -0.5
815,054 - ABID97_RS29455 0.13 -0.1
815,372 - ABID97_RS29455 0.39 -0.4
816,113 - -1.1
816,178 + -0.2

Or see this region's nucleotide sequence