Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29295 and ABID97_RS29300 overlap by 4 nucleotides ABID97_RS29300 and ABID97_RS29305 overlap by 4 nucleotides ABID97_RS29305 and ABID97_RS29310 overlap by 4 nucleotides
ABID97_RS29295: ABID97_RS29295 - extracellular solute-binding protein, at 781,878 to 784,109
_RS29295
ABID97_RS29300: ABID97_RS29300 - SMP-30/gluconolactonase/LRE family protein, at 784,106 to 785,035
_RS29300
ABID97_RS29305: ABID97_RS29305 - YncE family protein, at 785,032 to 785,961
_RS29305
ABID97_RS29310: ABID97_RS29310 - sugar ABC transporter ATP-binding protein, at 785,958 to 787,514
_RS29310
Position (kb) 784
785
786 Strain fitness (log2 ratio) -1
0
1 at 783.145 kb on - strand, within ABID97_RS29295 at 783.145 kb on - strand, within ABID97_RS29295 at 783.298 kb on - strand, within ABID97_RS29295 at 783.585 kb on + strand, within ABID97_RS29295 at 783.586 kb on - strand, within ABID97_RS29295 at 784.076 kb on + strand at 784.851 kb on - strand, within ABID97_RS29300 at 785.011 kb on + strand at 785.084 kb on - strand at 785.086 kb on + strand at 785.176 kb on + strand, within ABID97_RS29305 at 785.177 kb on - strand, within ABID97_RS29305 at 785.599 kb on + strand, within ABID97_RS29305 at 785.699 kb on - strand, within ABID97_RS29305
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 783,145 - ABID97_RS29295 0.57 +0.0 783,145 - ABID97_RS29295 0.57 +0.8 783,298 - ABID97_RS29295 0.64 -0.1 783,585 + ABID97_RS29295 0.76 -0.0 783,586 - ABID97_RS29295 0.77 +0.4 784,076 + -0.7 784,851 - ABID97_RS29300 0.80 +0.8 785,011 + -0.0 785,084 - -0.0 785,086 + +0.3 785,176 + ABID97_RS29305 0.15 +0.2 785,177 - ABID97_RS29305 0.16 -0.9 785,599 + ABID97_RS29305 0.61 -0.3 785,699 - ABID97_RS29305 0.72 +0.3
Or see this region's nucleotide sequence