Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20200 and ABID97_RS20205 are separated by 181 nucleotides ABID97_RS20205 and ABID97_RS20210 overlap by 4 nucleotides ABID97_RS20210 and ABID97_RS20215 overlap by 1 nucleotides ABID97_RS20215 and ABID97_RS20220 are separated by 12 nucleotides
ABID97_RS20200: ABID97_RS20200 - cell division protein FtsB, at 4,172,522 to 4,172,800
_RS20200
ABID97_RS20205: ABID97_RS20205 - nicotinamide riboside transporter PnuC, at 4,172,982 to 4,173,605
_RS20205
ABID97_RS20210: ABID97_RS20210 - ATP-binding protein, at 4,173,602 to 4,174,300
_RS20210
ABID97_RS20215: ABID97_RS20215 - hypothetical protein, at 4,174,300 to 4,175,277
_RS20215
ABID97_RS20220: ABID97_RS20220 - Hsp33 family molecular chaperone HslO, at 4,175,290 to 4,176,297
_RS20220
Position (kb) 4173
4174
4175 Strain fitness (log2 ratio) -1
0
1 at 4173.138 kb on + strand, within ABID97_RS20205 at 4173.138 kb on + strand, within ABID97_RS20205 at 4173.138 kb on + strand, within ABID97_RS20205 at 4173.139 kb on - strand, within ABID97_RS20205 at 4173.139 kb on - strand, within ABID97_RS20205 at 4173.139 kb on - strand, within ABID97_RS20205 at 4173.168 kb on + strand, within ABID97_RS20205 at 4173.476 kb on - strand, within ABID97_RS20205 at 4173.526 kb on - strand, within ABID97_RS20205 at 4173.558 kb on + strand at 4173.559 kb on - strand at 4173.735 kb on - strand, within ABID97_RS20210 at 4173.881 kb on + strand, within ABID97_RS20210 at 4173.882 kb on - strand, within ABID97_RS20210 at 4173.882 kb on - strand, within ABID97_RS20210 at 4174.511 kb on - strand, within ABID97_RS20215 at 4174.849 kb on + strand, within ABID97_RS20215 at 4174.849 kb on + strand, within ABID97_RS20215 at 4174.850 kb on - strand, within ABID97_RS20215 at 4175.077 kb on + strand, within ABID97_RS20215 at 4175.077 kb on + strand, within ABID97_RS20215 at 4175.077 kb on + strand, within ABID97_RS20215 at 4175.077 kb on + strand, within ABID97_RS20215 at 4175.078 kb on - strand, within ABID97_RS20215 at 4175.078 kb on - strand, within ABID97_RS20215 at 4175.078 kb on - strand, within ABID97_RS20215 at 4175.078 kb on - strand, within ABID97_RS20215 at 4175.078 kb on - strand, within ABID97_RS20215 at 4175.078 kb on - strand, within ABID97_RS20215 at 4175.147 kb on + strand, within ABID97_RS20215 at 4175.148 kb on - strand, within ABID97_RS20215 at 4175.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 4,173,138 + ABID97_RS20205 0.25 -1.0 4,173,138 + ABID97_RS20205 0.25 -0.0 4,173,138 + ABID97_RS20205 0.25 -0.3 4,173,139 - ABID97_RS20205 0.25 +0.3 4,173,139 - ABID97_RS20205 0.25 +0.0 4,173,139 - ABID97_RS20205 0.25 -0.5 4,173,168 + ABID97_RS20205 0.30 +0.5 4,173,476 - ABID97_RS20205 0.79 -0.5 4,173,526 - ABID97_RS20205 0.87 -0.5 4,173,558 + -0.0 4,173,559 - -0.0 4,173,735 - ABID97_RS20210 0.19 -0.2 4,173,881 + ABID97_RS20210 0.40 -0.4 4,173,882 - ABID97_RS20210 0.40 -0.2 4,173,882 - ABID97_RS20210 0.40 +0.3 4,174,511 - ABID97_RS20215 0.22 +0.1 4,174,849 + ABID97_RS20215 0.56 -0.0 4,174,849 + ABID97_RS20215 0.56 -0.2 4,174,850 - ABID97_RS20215 0.56 +0.1 4,175,077 + ABID97_RS20215 0.79 -0.2 4,175,077 + ABID97_RS20215 0.79 +0.4 4,175,077 + ABID97_RS20215 0.79 -0.4 4,175,077 + ABID97_RS20215 0.79 -0.3 4,175,078 - ABID97_RS20215 0.80 +0.2 4,175,078 - ABID97_RS20215 0.80 +0.3 4,175,078 - ABID97_RS20215 0.80 -0.2 4,175,078 - ABID97_RS20215 0.80 -0.6 4,175,078 - ABID97_RS20215 0.80 -1.1 4,175,078 - ABID97_RS20215 0.80 -0.0 4,175,147 + ABID97_RS20215 0.87 -0.4 4,175,148 - ABID97_RS20215 0.87 -0.7 4,175,291 + -0.4
Or see this region's nucleotide sequence