Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18445

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18435 and ABID97_RS18440 are separated by 86 nucleotidesABID97_RS18440 and ABID97_RS18445 are separated by 168 nucleotidesABID97_RS18445 and ABID97_RS18450 are separated by 151 nucleotidesABID97_RS18450 and ABID97_RS18455 are separated by 191 nucleotides ABID97_RS18435: ABID97_RS18435 - hypothetical protein, at 3,803,362 to 3,804,231 _RS18435 ABID97_RS18440: ABID97_RS18440 - hypothetical protein, at 3,804,318 to 3,804,731 _RS18440 ABID97_RS18445: ABID97_RS18445 - helix-turn-helix transcriptional regulator, at 3,804,900 to 3,805,274 _RS18445 ABID97_RS18450: ABID97_RS18450 - hypothetical protein, at 3,805,426 to 3,806,049 _RS18450 ABID97_RS18455: ABID97_RS18455 - transposase, at 3,806,241 to 3,806,720 _RS18455 Position (kb) 3804 3805 3806Strain fitness (log2 ratio) -1 0 1at 3804.065 kb on + strand, within ABID97_RS18435at 3804.110 kb on + strand, within ABID97_RS18435at 3805.086 kb on + strand, within ABID97_RS18445at 3805.303 kb on + strandat 3805.325 kb on - strandat 3805.404 kb on + strandat 3805.447 kb on + strandat 3805.587 kb on + strand, within ABID97_RS18450at 3805.627 kb on - strand, within ABID97_RS18450at 3806.253 kb on + strandat 3806.254 kb on - strandat 3806.254 kb on - strandat 3806.254 kb on - strandat 3806.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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3,804,065 + ABID97_RS18435 0.81 +0.1
3,804,110 + ABID97_RS18435 0.86 +0.0
3,805,086 + ABID97_RS18445 0.50 +0.7
3,805,303 + -0.1
3,805,325 - -0.1
3,805,404 + +0.1
3,805,447 + +0.1
3,805,587 + ABID97_RS18450 0.26 -0.1
3,805,627 - ABID97_RS18450 0.32 +0.3
3,806,253 + +0.5
3,806,254 - +0.6
3,806,254 - -0.7
3,806,254 - -0.2
3,806,254 - -0.2

Or see this region's nucleotide sequence