Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18435 and ABID97_RS18440 are separated by 86 nucleotides ABID97_RS18440 and ABID97_RS18445 are separated by 168 nucleotides ABID97_RS18445 and ABID97_RS18450 are separated by 151 nucleotides ABID97_RS18450 and ABID97_RS18455 are separated by 191 nucleotides
ABID97_RS18435: ABID97_RS18435 - hypothetical protein, at 3,803,362 to 3,804,231
_RS18435
ABID97_RS18440: ABID97_RS18440 - hypothetical protein, at 3,804,318 to 3,804,731
_RS18440
ABID97_RS18445: ABID97_RS18445 - helix-turn-helix transcriptional regulator, at 3,804,900 to 3,805,274
_RS18445
ABID97_RS18450: ABID97_RS18450 - hypothetical protein, at 3,805,426 to 3,806,049
_RS18450
ABID97_RS18455: ABID97_RS18455 - transposase, at 3,806,241 to 3,806,720
_RS18455
Position (kb)
3804
3805
3806 Strain fitness (log2 ratio)
-1
0
1 at 3804.065 kb on + strand, within ABID97_RS18435 at 3804.110 kb on + strand, within ABID97_RS18435 at 3805.086 kb on + strand, within ABID97_RS18445 at 3805.303 kb on + strand at 3805.325 kb on - strand at 3805.404 kb on + strand at 3805.447 kb on + strand at 3805.587 kb on + strand, within ABID97_RS18450 at 3805.627 kb on - strand, within ABID97_RS18450 at 3806.253 kb on + strand at 3806.254 kb on - strand at 3806.254 kb on - strand at 3806.254 kb on - strand at 3806.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 3,804,065 + ABID97_RS18435 0.81 +0.1 3,804,110 + ABID97_RS18435 0.86 +0.0 3,805,086 + ABID97_RS18445 0.50 +0.7 3,805,303 + -0.1 3,805,325 - -0.1 3,805,404 + +0.1 3,805,447 + +0.1 3,805,587 + ABID97_RS18450 0.26 -0.1 3,805,627 - ABID97_RS18450 0.32 +0.3 3,806,253 + +0.5 3,806,254 - +0.6 3,806,254 - -0.7 3,806,254 - -0.2 3,806,254 - -0.2
Or see this region's nucleotide sequence