Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08060

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08055 and ABID97_RS08060 overlap by 4 nucleotidesABID97_RS08060 and ABID97_RS08065 are separated by 146 nucleotides ABID97_RS08055: ABID97_RS08055 - MFS transporter, at 1,690,685 to 1,691,965 _RS08055 ABID97_RS08060: ABID97_RS08060 - FadR/GntR family transcriptional regulator, at 1,691,962 to 1,692,651 _RS08060 ABID97_RS08065: ABID97_RS08065 - penicillin-binding protein 1C, at 1,692,798 to 1,695,065 _RS08065 Position (kb) 1691 1692 1693Strain fitness (log2 ratio) -1 0 1at 1691.208 kb on + strand, within ABID97_RS08055at 1691.208 kb on + strand, within ABID97_RS08055at 1691.466 kb on + strand, within ABID97_RS08055at 1691.466 kb on + strand, within ABID97_RS08055at 1691.466 kb on + strand, within ABID97_RS08055at 1691.466 kb on + strand, within ABID97_RS08055at 1691.466 kb on + strand, within ABID97_RS08055at 1692.143 kb on + strand, within ABID97_RS08060at 1692.143 kb on + strand, within ABID97_RS08060at 1692.144 kb on - strand, within ABID97_RS08060at 1692.144 kb on - strand, within ABID97_RS08060at 1692.437 kb on + strand, within ABID97_RS08060at 1692.437 kb on + strand, within ABID97_RS08060at 1692.553 kb on + strandat 1692.651 kb on + strandat 1692.652 kb on - strandat 1692.652 kb on - strandat 1692.652 kb on - strandat 1692.652 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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1,691,208 + ABID97_RS08055 0.41 +0.4
1,691,208 + ABID97_RS08055 0.41 -0.4
1,691,466 + ABID97_RS08055 0.61 +0.4
1,691,466 + ABID97_RS08055 0.61 +0.6
1,691,466 + ABID97_RS08055 0.61 +0.2
1,691,466 + ABID97_RS08055 0.61 -0.5
1,691,466 + ABID97_RS08055 0.61 +0.3
1,692,143 + ABID97_RS08060 0.26 +0.0
1,692,143 + ABID97_RS08060 0.26 +0.7
1,692,144 - ABID97_RS08060 0.26 +0.1
1,692,144 - ABID97_RS08060 0.26 +0.0
1,692,437 + ABID97_RS08060 0.69 +1.7
1,692,437 + ABID97_RS08060 0.69 +0.3
1,692,553 + +0.5
1,692,651 + -0.2
1,692,652 - +0.9
1,692,652 - +0.0
1,692,652 - -0.2
1,692,652 - +0.6

Or see this region's nucleotide sequence